Lutibacter profundi str. LP1

rodmicroaerophile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Lutibacter

Description

Lutibacter profundi str. LP1 is a Gram-negative, non-motile bacterium characterized by its rod shape. This microorganism demonstrates a microaerophilic oxygen requirement, thriving in environments with low levels of oxygen. It possesses a single replicon, which is indicative of its genetic organization and replication strategy. The accession number for Lutibacter profundi str. LP1 is NZ_CP013355.1, which provides a reference for genomic studies and bioinformatics analyses. This strain is part of a broader understanding of the diversity of microbial life found in various ecological niches. The microaerophilic nature of Lutibacter profundi str. LP1 suggests that it may play a role in specific ecological processes where oxygen levels are limited. Such environments could include certain sediment layers in aquatic systems or the gastrointestinal tracts of various organisms. The presence of this bacterium in such niches highlights its potential contribution to biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition. Understanding the characteristics and ecological roles of Lutibacter profundi str. LP1 can provide insights into the complex interactions within microbial communities and their influence on ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusLutibacter
SpeciesLutibacter profundi
StrainLP1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperature23
Temperature rangeNot Available
Habitatbiofilm attached to black smoker chimney; Marine
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Lutibacter profundi strain LP1 chromosome, complete genome.

Gene Summary

Adenine Count

1043213 bp

Thymine Count

1040485 bp

Guanine Count

441498 bp

Cytosine Count

441782 bp

Genome Length

2966978 bp

Protein-coding Genes

2607 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseLupro_RS02465Not AvailableNegative551432 - 55217827292.9
imidazole glycerol phosphate synthase subunit hishLupro_RS02470Not AvailableNegative552283 - 55286421411.2
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisbLupro_RS02475Not AvailableNegative552932 - 55406843087.5
histidinol-phosphate transaminaseLupro_RS02480Not AvailableNegative554070 - 55511939651.0
histidinol dehydrogenaseLupro_RS02485Not AvailableNegative555234 - 55651746581.1
atp phosphoribosyltransferaseLupro_RS02490Not AvailableNegative556536 - 55739331490.6
phosphoribosylformylglycinamidine synthaseLupro_RS02495Not AvailablePositive557894 - 561670139643.0
amp-dependent synthetase/ligaseLupro_RS02500Not AvailablePositive561871 - 56365267323.5
dna polymerase iii subunit gamma/tauLupro_RS02505Not AvailablePositive563698 - 56538663829.2
monovalent cation:proton antiporter family proteinLupro_RS02510Not AvailablePositive565437 - 56736271855.6

Displaying genes 501 – 510 of 2657 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.