Lutibacter profundi str. LP1

rodmicroaerophile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Lutibacter

Description

Lutibacter profundi str. LP1 is a Gram-negative, non-motile bacterium characterized by its rod shape. This microorganism demonstrates a microaerophilic oxygen requirement, thriving in environments with low levels of oxygen. It possesses a single replicon, which is indicative of its genetic organization and replication strategy. The accession number for Lutibacter profundi str. LP1 is NZ_CP013355.1, which provides a reference for genomic studies and bioinformatics analyses. This strain is part of a broader understanding of the diversity of microbial life found in various ecological niches. The microaerophilic nature of Lutibacter profundi str. LP1 suggests that it may play a role in specific ecological processes where oxygen levels are limited. Such environments could include certain sediment layers in aquatic systems or the gastrointestinal tracts of various organisms. The presence of this bacterium in such niches highlights its potential contribution to biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition. Understanding the characteristics and ecological roles of Lutibacter profundi str. LP1 can provide insights into the complex interactions within microbial communities and their influence on ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusLutibacter
SpeciesLutibacter profundi
StrainLP1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperature23
Temperature rangeNot Available
Habitatbiofilm attached to black smoker chimney; Marine
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Lutibacter profundi strain LP1 chromosome, complete genome.

Gene Summary

Adenine Count

1043213 bp

Thymine Count

1040485 bp

Guanine Count

441498 bp

Cytosine Count

441782 bp

Genome Length

2966978 bp

Protein-coding Genes

2607 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)/fad-dependent oxidoreductaseLupro_RS11425Not AvailablePositive2588501 - 258954139644.4
duf983 domain-containing proteinLupro_RS11430Not AvailableNegative2589522 - 258992015371.3
abc-f family atp-binding cassette domain-containing proteinLupro_RS11435Not AvailablePositive2590031 - 259194773146.1
1-aminocyclopropane-1-carboxylate deaminase/d-cysteine desulfhydraseLupro_RS11440Not AvailablePositive2591988 - 259289634190.4
glucosaminidase domain-containing proteinLupro_RS13880Not AvailablePositive2592898 - 259368629839.3
carboxypeptidase-like regulatory domain-containing proteinLupro_RS11450Not AvailablePositive2593817 - 259556567585.5
hypothetical proteinLupro_RS11455Not AvailableNegative2595679 - 259613117350.5
ygiq family radical sam proteinLupro_RS11460Not AvailablePositive2596281 - 259822473893.1
mechanosensitive ion channel family proteinLupro_RS11465Not AvailablePositive2598292 - 259988460367.3
zinc-dependent metalloproteaseLupro_RS11470Not AvailableNegative2600057 - 260256795324.0

Displaying genes 2321 – 2330 of 2657 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.