Lutibacter profundi str. LP1

rodmicroaerophile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Lutibacter

Description

Lutibacter profundi str. LP1 is a Gram-negative, non-motile bacterium characterized by its rod shape. This microorganism demonstrates a microaerophilic oxygen requirement, thriving in environments with low levels of oxygen. It possesses a single replicon, which is indicative of its genetic organization and replication strategy. The accession number for Lutibacter profundi str. LP1 is NZ_CP013355.1, which provides a reference for genomic studies and bioinformatics analyses. This strain is part of a broader understanding of the diversity of microbial life found in various ecological niches. The microaerophilic nature of Lutibacter profundi str. LP1 suggests that it may play a role in specific ecological processes where oxygen levels are limited. Such environments could include certain sediment layers in aquatic systems or the gastrointestinal tracts of various organisms. The presence of this bacterium in such niches highlights its potential contribution to biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition. Understanding the characteristics and ecological roles of Lutibacter profundi str. LP1 can provide insights into the complex interactions within microbial communities and their influence on ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusLutibacter
SpeciesLutibacter profundi
StrainLP1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperature23
Temperature rangeNot Available
Habitatbiofilm attached to black smoker chimney; Marine
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Lutibacter profundi strain LP1 chromosome, complete genome.

Gene Summary

Adenine Count

1043213 bp

Thymine Count

1040485 bp

Guanine Count

441498 bp

Cytosine Count

441782 bp

Genome Length

2966978 bp

Protein-coding Genes

2607 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
penicillin-binding protein 2Lupro_RS11275Not AvailableNegative2553785 - 255564170211.7
rod shape-determining protein mredLupro_RS11280Not AvailableNegative2555642 - 255614819258.2
rod shape-determining protein mrecLupro_RS11285Not AvailableNegative2556141 - 255697431926.4
rod shape-determining proteinLupro_RS11290Not AvailableNegative2556997 - 255802537421.9
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolaseLupro_RS11295Not AvailableNegative2558078 - 255960456440.7
gaf domain-containing proteinLupro_RS11300Not AvailableNegative2559924 - 256037616894.3
exosortase family protein xrtfLupro_RS11305Not AvailablePositive2560416 - 256095220590.8
exosortase f system-associated membrane proteinLupro_RS11310Not AvailablePositive2560949 - 256137117263.9
heavy metal-binding domain-containing proteinLupro_RS11315Not AvailablePositive2561416 - 256170610934.4
carboxypeptidase regulatory-like domain-containing proteinLupro_RS11320Not AvailableNegative2561748 - 256419293396.4

Displaying genes 2291 – 2300 of 2657 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.