Lutibacter profundi str. LP1

rodmicroaerophile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Lutibacter

Description

Lutibacter profundi str. LP1 is a Gram-negative, non-motile bacterium characterized by its rod shape. This microorganism demonstrates a microaerophilic oxygen requirement, thriving in environments with low levels of oxygen. It possesses a single replicon, which is indicative of its genetic organization and replication strategy. The accession number for Lutibacter profundi str. LP1 is NZ_CP013355.1, which provides a reference for genomic studies and bioinformatics analyses. This strain is part of a broader understanding of the diversity of microbial life found in various ecological niches. The microaerophilic nature of Lutibacter profundi str. LP1 suggests that it may play a role in specific ecological processes where oxygen levels are limited. Such environments could include certain sediment layers in aquatic systems or the gastrointestinal tracts of various organisms. The presence of this bacterium in such niches highlights its potential contribution to biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition. Understanding the characteristics and ecological roles of Lutibacter profundi str. LP1 can provide insights into the complex interactions within microbial communities and their influence on ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusLutibacter
SpeciesLutibacter profundi
StrainLP1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperature23
Temperature rangeNot Available
Habitatbiofilm attached to black smoker chimney; Marine
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Lutibacter profundi strain LP1 chromosome, complete genome.

Gene Summary

Adenine Count

1043213 bp

Thymine Count

1040485 bp

Guanine Count

441498 bp

Cytosine Count

441782 bp

Genome Length

2966978 bp

Protein-coding Genes

2607 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphopyruvate hydrataseLupro_RS04960Not AvailableNegative1109021 - 111030746369.2
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunitLupro_RS04965Not AvailableNegative1110452 - 111155841405.4
50s ribosomal protein l17Lupro_RS04970Not AvailableNegative1111664 - 111213117796.6
dna-directed rna polymerase subunit alphaLupro_RS04975Not AvailableNegative1112170 - 111316237344.0
30s ribosomal protein s4Lupro_RS04980Not AvailableNegative1113185 - 111379022752.2
30s ribosomal protein s11Lupro_RS04985Not AvailableNegative1113875 - 111425813727.7
30s ribosomal protein s13Lupro_RS04990Not AvailableNegative1114271 - 111464514158.3
type b 50s ribosomal protein l36Lupro_RS13130Not AvailableNegative1114648 - 11147644602.87
translation initiation factor if-1Lupro_RS04995Not AvailableNegative1114775 - 11149908122.01
preprotein translocase subunit secyLupro_RS05000Not AvailableNegative1114995 - 111632948432.9

Displaying genes 1011 – 1020 of 2657 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.