Lutibacter profundi str. LP1

rodmicroaerophile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Lutibacter

Description

Lutibacter profundi strain LP1 is a Gram-negative, rod-shaped bacterium that exhibits microaerophilic growth characteristics. This organism requires a reduced oxygen concentration for optimal growth, indicating its adaptation to environments with limited oxygen availability. The microaerophilic nature of Lutibacter profundi str. LP1 suggests a potential ecological role in environments where oxygen gradients are present, such as deep-sea sediments or anoxic zones. The Gram-negative classification of Lutibacter profundi str. LP1 implies the presence of an outer membrane containing lipopolysaccharides, which is characteristic of this group and may influence its interaction with surrounding microorganisms and the environment. The rod shape of the bacterium could enhance its motility and surface area for nutrient absorption, possibly contributing to its survival in nutrient-limited habitats. Overall, Lutibacter profundi str. LP1 exemplifies adaptations suited to specialized niches where microaerophilic conditions prevail, potentially playing a significant role in biogeochemical cycling within its environment. Understanding the physiological traits of this strain could provide insights into the functional diversity of microbial communities in oxygen-stratified ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusLutibacter
SpeciesLutibacter profundi
StrainLP1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lutibacter profundi str. LP1


Gene Summary

Adenine Count

1043213 bp

Thymine Count

1040485 bp

Guanine Count

441498 bp

Cytosine Count

441782 bp

Genome Length

2966978 bp

Protein-coding Genes

2607 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaLupro_RS00005Not Available+1 - 142854549.8
low molecular weight protein-tyrosine-phosphataseLupro_RS00010Not Available+1437 - 189817205.6
sam-dependent methyltransferaseLupro_RS00015Not Available+1891 - 260726870.9
peptidoglycan-binding protein lysmLupro_RS00020Not Available-2780 - 339723039.6
endolytic transglycosylase mltgLupro_RS00025Not Available-3607 - 464139600.3
gnat family n-acetyltransferaseLupro_RS00030Not Available-4631 - 516420673.8
diaminopimelate epimeraseLupro_RS00035Not Available-5164 - 594328736.4
do family serine endopeptidaseLupro_RS00040Not Available+6104 - 751050864.3
glyceraldehyde-3-phosphate dehydrogenaseLupro_RS00045Not Available+7632 - 907753933.5
dmt family transporterLupro_RS00050Not Available+9134 - 1004833809.8

Displaying genes 1 – 10 of 2657 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites