Pontibacter ummariensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter ummariensis is a Gram-negative, rod-shaped bacterium characterized as a heterotroph and requiring aerobic conditions for growth. This species is non-motile and exhibits mesophilic growth characteristics, with an optimal temperature of 29°C. The bacterium has a single replicon, which is indicative of its genetic organization. Its accession number is FZOQ00000000.1, providing a reference for genomic studies and further research into its biological functions. The ecological significance of Pontibacter ummariensis may lie in its role within microbial communities, particularly in environments where organic matter decomposition occurs. As a heterotrophic organism, it likely contributes to nutrient cycling by breaking down organic compounds, thus facilitating the availability of nutrients for other organisms in its ecosystem. Understanding the traits and ecological roles of such microorganisms can provide insights into their contributions to environmental health and stability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter ummariensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceheterotroph
PathogenicityNot Available

Genome Summary

Pontibacter ummariensis strain NKM1 genome assembly, contig:

Gene Summary

Adenine Count

1476968 bp

Thymine Count

1491156 bp

Guanine Count

1505158 bp

Cytosine Count

1500213 bp

Genome Length

5973733 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein of unknown functionSAMN06296052_11288Not AvailableNegative3239093 - 32393148655.83
protein of unknown functionSAMN06296052_11289Not AvailableNegative3239623 - 324093651554.1
atp-binding cassette protein, chvd familySAMN06296052_11290Not AvailablePositive3241294 - 324296462862.7
hypothetical proteinSAMN06296052_11291Not AvailablePositive3243396 - 32434913395.19
cubico group peptidase, beta-lactamase class c familySAMN06296052_11292Not AvailableNegative3243568 - 324514558738.6
hypothetical proteinSAMN06296052_11293Not AvailableNegative3245246 - 324622037697.0
protein n-acetyltransferase, rimj/riml familySAMN06296052_11294Not AvailablePositive3246356 - 324693122036.2
putative collagen-binding domain of a collagenaseSAMN06296052_11295Not AvailablePositive3246949 - 324831951960.5
peptide deformylaseSAMN06296052_11296Not AvailableNegative3248396 - 324896521762.0
putative holliday junction resolvaseSAMN06296052_11297Not AvailableNegative3248962 - 324937815213.7

Displaying genes 2881 – 2890 of 5193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.