Pontibacter ummariensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter ummariensis is a Gram-negative, rod-shaped bacterium characterized as a heterotroph and requiring aerobic conditions for growth. This species is non-motile and exhibits mesophilic growth characteristics, with an optimal temperature of 29°C. The bacterium has a single replicon, which is indicative of its genetic organization. Its accession number is FZOQ00000000.1, providing a reference for genomic studies and further research into its biological functions. The ecological significance of Pontibacter ummariensis may lie in its role within microbial communities, particularly in environments where organic matter decomposition occurs. As a heterotrophic organism, it likely contributes to nutrient cycling by breaking down organic compounds, thus facilitating the availability of nutrients for other organisms in its ecosystem. Understanding the traits and ecological roles of such microorganisms can provide insights into their contributions to environmental health and stability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter ummariensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceheterotroph
PathogenicityNot Available

Genome Summary

Pontibacter ummariensis strain NKM1 genome assembly, contig:

Gene Summary

Adenine Count

1476968 bp

Thymine Count

1491156 bp

Guanine Count

1505158 bp

Cytosine Count

1500213 bp

Genome Length

5973733 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
predicted flavoprotein czco associated with the cation diffusion facilitator czcdSAMN06296052_11046Not AvailablePositive2819475 - 282063844009.9
d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4)SAMN06296052_11047Not AvailableNegative2821199 - 282255148997.0
alpha-l-fucosidaseSAMN06296052_11048Not AvailableNegative2822810 - 282418952991.4
putative membrane-bound dehydrogenase domain-containing proteinSAMN06296052_11049Not AvailablePositive2824652 - 2828080125846.0
predicted dehydrogenaseSAMN06296052_11050Not AvailableNegative2828355 - 282969850560.0
protein of unknown functionSAMN06296052_11051Not AvailableNegative2829790 - 283120552253.6
alpha-l-rhamnosidase n-terminal domain-containing proteinSAMN06296052_11052Not AvailableNegative2831261 - 283366389241.1
glycosyl-hydrolase 97 c-terminal, oligomerisationSAMN06296052_11053Not AvailableNegative2834654 - 283684382944.0
carbohydrate binding module (family 6)SAMN06296052_11054Not AvailableNegative2837001 - 2839730101493.0
alpha-amylaseSAMN06296052_11055Not AvailableNegative2840029 - 284139050843.4

Displaying genes 2521 – 2530 of 5193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.