Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Hymenobacteraceae
Genus
Pontibacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Hymenobacteraceae |
| Genus | Pontibacter |
| Species | Pontibacter ummariensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1476968 bp
Thymine Count
1491156 bp
Guanine Count
1505158 bp
Cytosine Count
1500213 bp
Genome Length
5973733 bp
Protein-coding Genes
5122 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna binding domain-containing protein, excisionase family | SAMN06296052_109135 | Not Available | Positive | 2686796 - 2687389 | 22790.4 |
| site-specific recombinase xerd | SAMN06296052_109136 | Not Available | Positive | 2687386 - 2688504 | 43510.2 |
| transcriptional regulator, alpa family | SAMN06296052_109137 | Not Available | Positive | 2688809 - 2689150 | 13478.2 |
| site-specific dna recombinase | SAMN06296052_109138 | Not Available | Negative | 2689199 - 2690872 | 63420.6 |
| hypothetical protein | SAMN06296052_109139 | Not Available | Negative | 2690869 - 2691252 | 14694.5 |
| dna-binding transcriptional regulator, merr family | SAMN06296052_109140 | Not Available | Negative | 2691419 - 2692252 | 32121.1 |
| protein of unknown function | SAMN06296052_109141 | Not Available | Negative | 2692575 - 2694839 | 85187.8 |
| hypothetical protein | SAMN06296052_109142 | Not Available | Negative | 2695058 - 2695861 | 31853.0 |
| type i restriction enzyme, r subunit | SAMN06296052_109143 | Not Available | Negative | 2695984 - 2699292 | 128044.0 |
| uncharacterized conserved protein, contains parb-like and hnh nuclease domains | SAMN06296052_109144 | Not Available | Negative | 2699280 - 2701166 | 73810.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
