Pontibacter ummariensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter ummariensis is a Gram-negative, rod-shaped bacterium characterized as a heterotroph and requiring aerobic conditions for growth. This species is non-motile and exhibits mesophilic growth characteristics, with an optimal temperature of 29°C. The bacterium has a single replicon, which is indicative of its genetic organization. Its accession number is FZOQ00000000.1, providing a reference for genomic studies and further research into its biological functions. The ecological significance of Pontibacter ummariensis may lie in its role within microbial communities, particularly in environments where organic matter decomposition occurs. As a heterotrophic organism, it likely contributes to nutrient cycling by breaking down organic compounds, thus facilitating the availability of nutrients for other organisms in its ecosystem. Understanding the traits and ecological roles of such microorganisms can provide insights into their contributions to environmental health and stability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter ummariensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceheterotroph
PathogenicityNot Available

Genome Summary

Pontibacter ummariensis strain NKM1 genome assembly, contig:

Gene Summary

Adenine Count

1476968 bp

Thymine Count

1491156 bp

Guanine Count

1505158 bp

Cytosine Count

1500213 bp

Genome Length

5973733 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cation:h+ antiporterSAMN06296052_106180Not AvailableNegative2011777 - 201273934510.4
dna-binding regulatory protein, yebc/pmpr familySAMN06296052_106181Not AvailableNegative2012859 - 201356626663.6
abc transporterSAMN06296052_106182Not AvailableNegative2013780 - 201441224019.8
acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferaseSAMN06296052_106183Not AvailableNegative2014402 - 201519328524.6
3-hydroxyacyl-[acyl-carrier-protein] dehydratase /udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylaseSAMN06296052_106184Not AvailableNegative2015190 - 201658451094.1
udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferaseSAMN06296052_106185Not AvailableNegative2016732 - 201778437011.0
hypothetical proteinSAMN06296052_106186Not AvailableNegative2017977 - 201920947049.8
response regulator receiver domain-containing proteinSAMN06296052_106187Not AvailablePositive2019362 - 202092460707.3
trna threonylcarbamoyladenosine biosynthesis protein tsaeSAMN06296052_106188Not AvailablePositive2020953 - 202136315088.0
alanine dehydrogenaseSAMN06296052_106189Not AvailablePositive2021365 - 202259144908.1

Displaying genes 1871 – 1880 of 5193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.