Pontibacter ummariensis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Pontibacter

Description

Pontibacter ummariensis is a Gram-negative, rod-shaped bacterium characterized as a heterotroph and requiring aerobic conditions for growth. This species is non-motile and exhibits mesophilic growth characteristics, with an optimal temperature of 29°C. The bacterium has a single replicon, which is indicative of its genetic organization. Its accession number is FZOQ00000000.1, providing a reference for genomic studies and further research into its biological functions. The ecological significance of Pontibacter ummariensis may lie in its role within microbial communities, particularly in environments where organic matter decomposition occurs. As a heterotrophic organism, it likely contributes to nutrient cycling by breaking down organic compounds, thus facilitating the availability of nutrients for other organisms in its ecosystem. Understanding the traits and ecological roles of such microorganisms can provide insights into their contributions to environmental health and stability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusPontibacter
SpeciesPontibacter ummariensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceheterotroph
PathogenicityNot Available

Genome Summary

Pontibacter ummariensis strain NKM1 genome assembly, contig:

Gene Summary

Adenine Count

1476968 bp

Thymine Count

1491156 bp

Guanine Count

1505158 bp

Cytosine Count

1500213 bp

Genome Length

5973733 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transposase is200 likeSAMN06296052_103161Not AvailableNegative1079806 - 108032420923.1
hypothetical proteinSAMN06296052_103162Not AvailableNegative1081160 - 108219740073.2
ribonucleoside-diphosphate reductase alpha chainSAMN06296052_103163Not AvailableNegative1082338 - 108472289775.8
ribonucleoside-diphosphate reductase beta chainSAMN06296052_103164Not AvailableNegative1085078 - 108603736821.0
lsu ribosomal protein l21pSAMN06296052_103165Not AvailablePositive1086624 - 108698313308.3
large subunit ribosomal protein l27SAMN06296052_103166Not AvailablePositive1087054 - 10873239505.4
methionine synthase (b12-dependent)SAMN06296052_103168Not AvailablePositive1087790 - 1091506136958.0
5,10-methylenetetrahydrofolate reductase (nad(p))SAMN06296052_103169Not AvailablePositive1091567 - 109252336075.3
l-2-hydroxyglutarate oxidaseSAMN06296052_103170Not AvailablePositive1092776 - 109400244802.0
oxygen-independent coproporphyrinogen-3 oxidaseSAMN06296052_103171Not AvailableNegative1094047 - 109511139929.3

Displaying genes 1041 – 1050 of 5193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.