Stenotrophomonas sp. DDT-1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas sp. DDT-1 is a rod-shaped bacterium characterized by the presence of flagella, which aids in its motility. This species has a single replicon, indicating a streamlined genetic composition. The genomic data for Stenotrophomonas sp. DDT-1 can be accessed through the accession number LEKR00000000.1, which provides a basis for further research and understanding of its genetic makeup. Stenotrophomonas is known for its versatility and adaptability in various environments, often found in soil, water, and in association with plants. The presence of flagella suggests that Stenotrophomonas sp. DDT-1 may possess enhanced mobility, potentially facilitating its ability to colonize diverse habitats. This motility is crucial for the bacterium’s survival and ecological role, as it may help in nutrient acquisition and interaction with other microorganisms. The single replicon structure may reflect a simplified regulatory mechanism, allowing for efficient replication and adaptation to environmental changes. Understanding the traits of Stenotrophomonas sp. DDT-1 is essential for comprehending its ecological interactions and potential applications in biotechnology or bioremediation. As a member of the Stenotrophomonas genus, it may contribute to nutrient cycling and soil health, underscoring the importance of this bacterium in its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas sp. DDT-1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas sp. DDT-1 Scaffold97_1, whole genome shotgun

Gene Summary

Adenine Count

761811 bp

Thymine Count

752284 bp

Guanine Count

1482927 bp

Cytosine Count

1517547 bp

Genome Length

4514569 bp

Protein-coding Genes

2256 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lexa family transcriptional regulatorAB839_16275Not AvailableNegative1547343 - 154797823122.0
ubiquinone biosynthesis protein ubibAB839_16280Not AvailableNegative1548161 - 154984362256.9
damage-inducible protein cinaAB839_16285Not AvailableNegative1549878 - 155037217155.6
gtpase hflxAB839_16290Not AvailableNegative1550495 - 155180548182.6
rna-binding protein hfqAB839_16295Not AvailableNegative1551820 - 15520959806.71
trna dimethylallyltransferaseAB839_16300Not AvailableNegative1552193 - 155314634519.6
dihydropteroate synthaseAB839_16305Not AvailableNegative1553146 - 155404231651.0
hypothetical proteinAB839_16310Not AvailableNegative1554643 - 15548286426.11
atp-dependent metalloproteaseAB839_16315Not AvailableNegative1554931 - 155686569740.9
23s rrna methyltransferaseAB839_16320Not AvailableNegative1556935 - 155756723677.6

Displaying genes 1361 – 1370 of 2256 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

23 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0001358lactateC3H5O3Chemical structure of lactateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00033532-dehydro-3-deoxy-6-phospho-D-galactonateC6H8O9PChemical structure of 2-dehydro-3-deoxy-6-phospho-D-galactonate32120-43-7
Average255.0961Da
Monoisotopic254.9905934Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0004066di-trans,octa-cis-undecaprenolC55H90OChemical structure of di-trans,octa-cis-undecaprenolNot available
Average767.324Da
Monoisotopic766.6991675Da

Displaying 1–10 of 23 metabolites

Health Effects

No health effects information available for this bacterium.