Pseudomonas sp. FeS53a

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. FeS53a is characterized by having a single replicon, which is indicative of its genomic structure. The complete genomic sequence is available under the accession number JYFT00000000.1, providing a resource for further study and analysis of its genetic makeup. Pseudomonas species are known for their metabolic versatility and ability to thrive in various environments, including soil, water, and as plant pathogens. While specific traits related to the ecological niches occupied by Pseudomonas sp. FeS53a are not provided, the general characteristics of the genus suggest that it may play a role in nutrient cycling and may possess capabilities beneficial for bioremediation processes. The presence of a single replicon can influence the organism's growth and adaptability, as it may affect gene regulation and expression. This trait could potentially facilitate the organism's response to environmental stresses or changes, allowing it to occupy specific ecological niches effectively. In summary, Pseudomonas sp. FeS53a, with its single replicon and available genomic data, represents an organism with potential ecological significance. Its metabolic capabilities, characteristic of the Pseudomonas genus, may contribute to its role in environmental processes, although specific applications or interactions remain to be explored through further research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. FeS53a
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. FeS53a
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. FeS53a scaffold9.1, whole genome shotgun sequence.

Gene Summary

Adenine Count

975079 bp

Thymine Count

966690 bp

Guanine Count

1990676 bp

Cytosine Count

2004694 bp

Genome Length

5937975 bp

Protein-coding Genes

5368 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c oxidase subunit ccopSZ55_0395Q8KS19Negative418225 - 41919935464.1
cytochrome c oxidase subunit ccoqSZ55_0396Not AvailableNegative419196 - 4193846863.07
cytochrome c oxidase subunit ccooSZ55_0397Not AvailableNegative419390 - 42000122670.3
cytochrome c oxidase subunit cconSZ55_0398Not AvailableNegative420001 - 42144053572.9
cytochrome c oxidase subunit ccopSZ55_0399D9IA45Negative421877 - 42281534039.7
cytochrome c oxidase subunit ccoqSZ55_0400Not AvailableNegative422812 - 4229946589.92
cytochrome c oxidase subunit ccooSZ55_0401Not AvailableNegative422998 - 42360922622.3
cytochrome c oxidase subunit cconSZ55_0402Not AvailableNegative423621 - 42504552868.1
putative hydrolase of the alpha/beta-hydrolase foldSZ55_0403Not AvailablePositive425245 - 42577519417.3
leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport systemSZ55_0404P56901Negative425791 - 42626117772.3

Displaying genes 441 – 450 of 5470 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

345 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 345 metabolites

Health Effects

No health effects information available for this bacterium.