Variovorax sp. EL159

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. EL159 is a rod-shaped bacterium notable for its single replicon, indicating a streamlined genomic structure. The organism is classified under the genus Variovorax, which is known for its metabolic versatility and ability to thrive in diverse environments. The specific accession number for Variovorax sp. EL159 is FMUJ00000000.1, which facilitates its identification and study within microbial databases. This bacterium's rod shape suggests a potential adaptation for efficient nutrient uptake and motility, characteristics often associated with bacteria in various ecological niches. Variovorax species are commonly found in soil and aquatic environments, where they play significant roles in nutrient cycling and biodegradation processes. The presence of a single replicon in Variovorax sp. EL159 may reflect an evolutionary advantage in its ecological interactions, enabling it to replicate rapidly and respond effectively to environmental changes. This trait may contribute to its survival in competitive environments, where quick adaptation is crucial. Overall, the traits of Variovorax sp. EL159 highlight its potential ecological significance, particularly in bioremediation and nutrient cycling, as it may contribute to the degradation of pollutants and maintenance of soil health. Its rod shape and genomic organization provide insights into the organism's adaptability and ecological roles, emphasizing the importance of microbial diversity in ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. EL159
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. EL159 genome assembly, contig: Ga0059267_116, whole

Gene Summary

Adenine Count

1162382 bp

Thymine Count

1169281 bp

Guanine Count

2351010 bp

Cytosine Count

2318868 bp

Genome Length

7004648 bp

Protein-coding Genes

6365 genes

Non-Coding Genes

115 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s rrna pseudouridine516 synthaseSAMN03159363_0344Not AvailablePositive367803 - 36855227271.8
40-residue yvtn family beta-propeller repeat-containing proteinSAMN03159363_0345Not AvailablePositive368643 - 36965936637.0
peptidoglycan/xylan/chitin deacetylase, pgda/cda1 familySAMN03159363_0346Not AvailablePositive369643 - 37045229366.8
sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamilySAMN03159363_0347Not AvailablePositive370462 - 37143637154.8
etoposide-induced protein 2.4 (ei24)SAMN03159363_0348Not AvailablePositive371487 - 37237732201.3
predicted nucleotide-utilizing enzymeSAMN03159363_0349Not AvailablePositive372362 - 37317429503.6
l-glutamine synthetaseSAMN03159363_0350Not AvailablePositive373321 - 37473652356.1
hypothetical proteinSAMN03159363_0351Not AvailablePositive374883 - 37539518122.3
two-component system, ntrc family, nitrogen regulation sensor histidine kinase glnlSAMN03159363_0352Not AvailablePositive375409 - 37648840177.2
two-component system, ntrc family, nitrogen regulation response regulator glngSAMN03159363_0353Not AvailablePositive376513 - 37806356105.2

Displaying genes 421 – 430 of 6480 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.