Pseudomonas sp. NFIX28

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. NFIX28 is characterized by having a single replicon. Its genetic information is cataloged under the accession number FNPW00000000.1. The significance of having a single replicon suggests a streamlined genomic structure, which can impact the organism's replication and metabolic processes. This trait may contribute to its adaptability in various environments where Pseudomonas species are commonly found. Pseudomonas species are known for their metabolic versatility, enabling them to thrive in diverse ecological niches, including soil, water, and plant surfaces. This adaptability is particularly relevant in bioremediation efforts, where they can degrade pollutants and improve soil health. The genomic data provided by the accession number FNPW00000000.1 can facilitate further research into the specific traits and capabilities of Pseudomonas sp. NFIX28, potentially revealing insights into its ecological roles and applications in biotechnology. Understanding such traits can enhance our knowledge of microbial diversity and the functional roles of microorganisms in their ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. NFIX28
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. NFIX28
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. NFIX28 genome assembly, contig:

Gene Summary

Adenine Count

1266361 bp

Thymine Count

1242748 bp

Guanine Count

2081710 bp

Cytosine Count

2122742 bp

Genome Length

6734225 bp

Protein-coding Genes

5855 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glucose 1-dehydrogenaseSAMN03159453_05695Not AvailablePositive6226718 - 622751827861.4
glucoamylase (glucan-1,4-alpha-glucosidase), gh15 familySAMN03159453_05696Not AvailablePositive6227511 - 622933168579.7
integrase core domain-containing proteinSAMN03159453_05697Not AvailablePositive6229466 - 622975311397.0
hypothetical proteinSAMN03159453_05698Not AvailableNegative6229963 - 62301486933.16
agmatine deiminaseSAMN03159453_05699Not AvailableNegative6230402 - 623150840684.9
n-carbamoylputrescine amidaseSAMN03159453_05700Not AvailableNegative6231513 - 623239132698.5
hydroxylysine kinaseSAMN03159453_05701Not AvailableNegative6232676 - 6235588106093.0
dtdp-glucose 4,6-dehydrataseSAMN03159453_05702Not AvailablePositive6235800 - 623688240032.3
glucose-1-phosphate thymidylyltransferaseSAMN03159453_05703Not AvailablePositive6236879 - 623775432201.4
dtdp-4-dehydrorhamnose 3,5-epimeraseSAMN03159453_05704Not AvailablePositive6237751 - 623829620468.2

Displaying genes 5631 – 5640 of 6061 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.