Pseudomonas sp. NFIX28

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. NFIX28 is characterized by having a single replicon. Its genetic information is cataloged under the accession number FNPW00000000.1. The significance of having a single replicon suggests a streamlined genomic structure, which can impact the organism's replication and metabolic processes. This trait may contribute to its adaptability in various environments where Pseudomonas species are commonly found. Pseudomonas species are known for their metabolic versatility, enabling them to thrive in diverse ecological niches, including soil, water, and plant surfaces. This adaptability is particularly relevant in bioremediation efforts, where they can degrade pollutants and improve soil health. The genomic data provided by the accession number FNPW00000000.1 can facilitate further research into the specific traits and capabilities of Pseudomonas sp. NFIX28, potentially revealing insights into its ecological roles and applications in biotechnology. Understanding such traits can enhance our knowledge of microbial diversity and the functional roles of microorganisms in their ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. NFIX28
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. NFIX28
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. NFIX28 genome assembly, contig:

Gene Summary

Adenine Count

1266361 bp

Thymine Count

1242748 bp

Guanine Count

2081710 bp

Cytosine Count

2122742 bp

Genome Length

6734225 bp

Protein-coding Genes

5855 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-ornithine n5-oxygenaseSAMN03159453_05675Not AvailableNegative6172302 - 617363649401.4
rna polymerase sigma-70 factor, ecf subfamilySAMN03159453_05676Not AvailableNegative6173768 - 617426819179.1
membrane fusion protein, macrolide-specific efflux systemSAMN03159453_05677Not AvailablePositive6174584 - 617575642322.6
macrolide transport system atp-binding/permease proteinSAMN03159453_05678Not AvailablePositive6175757 - 617773069565.2
efflux transporter, outer membrane factor (omf) lipoprotein, nodt familySAMN03159453_05679Not AvailablePositive6177727 - 617913650948.4
tat (twin-arginine translocation) pathway signal sequenceSAMN03159453_05680Not AvailableNegative6179219 - 618084761669.1
zn-dependent dipeptidase, dipeptidase homologSAMN03159453_05681Not AvailablePositive6181058 - 618243150191.9
tat (twin-arginine translocation) pathway signal sequenceSAMN03159453_05682Not AvailablePositive6182453 - 618375448364.6
formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domainSAMN03159453_05683Not AvailablePositive6183811 - 618467431690.2
formyl transferaseSAMN03159453_05684Not AvailableNegative6184761 - 618563332732.9

Displaying genes 5611 – 5620 of 6061 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.