Pseudomonas sp. NFPP04

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. NFPP04 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The genomic information for this strain is cataloged under the accession number FOQS00000000.1, which provides a basis for further studies and comparisons with other Pseudomonas species. Pseudomonas species are known for their metabolic diversity, enabling them to thrive in a wide range of ecological niches, including soil, water, and as plant symbionts. The single replicon feature of NFPP04 could suggest a potential for rapid replication and adaptation, which is a common trait among bacteria in dynamic environments. Moreover, Pseudomonas species are often recognized for their role in bioremediation and nutrient cycling within ecosystems. The traits of NFPP04 may support its function in these ecological processes, particularly if it possesses the necessary metabolic pathways to degrade pollutants or contribute to nutrient availability. Understanding the genomic characteristics of Pseudomonas sp. NFPP04 can provide insights into its ecological roles and potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. NFPP04
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. NFPP04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. NFPP04 genome assembly, contig:

Gene Summary

Adenine Count

1208917 bp

Thymine Count

1243632 bp

Guanine Count

1944715 bp

Cytosine Count

1886809 bp

Genome Length

6285678 bp

Protein-coding Genes

5594 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-leucine abc transporter atp-binding protein /l-isoleucine abc transporter atp-binding protein /l-valine abc transporter atp-binding proteinSAMN03159342_00670Not AvailableNegative728120 - 72888728276.5
branched-chain amino acid transport system permease proteinSAMN03159342_00671Not AvailableNegative728884 - 73013745689.8
l-leucine abc transporter membrane protein /l-isoleucine abc transporter membrane protein /l-valine abc transporter membrane proteinSAMN03159342_00672Not AvailableNegative730134 - 73105732313.6
l-leucine-binding protein /l-isoleucine-binding protein /l-valine-binding proteinSAMN03159342_00673Not AvailableNegative731287 - 73241439651.3
hypothetical proteinSAMN03159342_00674Not AvailablePositive732756 - 73306110999.1
hypothetical proteinSAMN03159342_00675Not AvailableNegative733350 - 73552781876.2
diguanylate cyclase (ggdef) domain-containing proteinSAMN03159342_00676Not AvailableNegative735732 - 73799682670.8
hypothetical proteinSAMN03159342_00677Not AvailableNegative738136 - 73850112968.2
predicted arabinose efflux permease, mfs familySAMN03159342_00678Not AvailablePositive738753 - 74009948875.7
atp-dependent helicase hepaSAMN03159342_00679Not AvailableNegative740267 - 743113106652.0

Displaying genes 671 – 680 of 5656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.