Pseudomonas sp. NFPP04

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. NFPP04 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The genomic information for this strain is cataloged under the accession number FOQS00000000.1, which provides a basis for further studies and comparisons with other Pseudomonas species. Pseudomonas species are known for their metabolic diversity, enabling them to thrive in a wide range of ecological niches, including soil, water, and as plant symbionts. The single replicon feature of NFPP04 could suggest a potential for rapid replication and adaptation, which is a common trait among bacteria in dynamic environments. Moreover, Pseudomonas species are often recognized for their role in bioremediation and nutrient cycling within ecosystems. The traits of NFPP04 may support its function in these ecological processes, particularly if it possesses the necessary metabolic pathways to degrade pollutants or contribute to nutrient availability. Understanding the genomic characteristics of Pseudomonas sp. NFPP04 can provide insights into its ecological roles and potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. NFPP04
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. NFPP04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. NFPP04 genome assembly, contig:

Gene Summary

Adenine Count

1208917 bp

Thymine Count

1243632 bp

Guanine Count

1944715 bp

Cytosine Count

1886809 bp

Genome Length

6285678 bp

Protein-coding Genes

5594 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pas domain s-box-containing protein/diguanylate cyclase (ggdef) domain-containing proteinSAMN03159342_05392Not AvailableNegative5956417 - 5959695122998.0
transcriptional regulator, lysr familySAMN03159342_05393Not AvailableNegative5959762 - 596065232199.9
3-isopropylmalate dehydratase, large subunitSAMN03159342_05394Not AvailablePositive5960792 - 596221050765.7
3-isopropylmalate dehydratase, small subunitSAMN03159342_05395Not AvailablePositive5962221 - 596286524226.4
methyltransferase domain-containing proteinSAMN03159342_05396Not AvailablePositive5962994 - 596375828060.2
3-isopropylmalate dehydrogenaseSAMN03159342_05397Not AvailablePositive5963812 - 596489438791.8
aspartate semialdehyde dehydrogenaseSAMN03159342_05398Not AvailablePositive5964959 - 596607140613.3
aspartate-semialdehyde dehydrogenaseSAMN03159342_05399Not AvailablePositive5966311 - 596732135121.4
pilus assembly protein fimvSAMN03159342_05400Not AvailablePositive5967484 - 597003389961.5
trna pseudouridine38-40 synthaseSAMN03159342_05401Not AvailablePositive5970145 - 597099931850.2

Displaying genes 5331 – 5340 of 5656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.