Pseudomonas sp. NFPP04

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. NFPP04 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The genomic information for this strain is cataloged under the accession number FOQS00000000.1, which provides a basis for further studies and comparisons with other Pseudomonas species. Pseudomonas species are known for their metabolic diversity, enabling them to thrive in a wide range of ecological niches, including soil, water, and as plant symbionts. The single replicon feature of NFPP04 could suggest a potential for rapid replication and adaptation, which is a common trait among bacteria in dynamic environments. Moreover, Pseudomonas species are often recognized for their role in bioremediation and nutrient cycling within ecosystems. The traits of NFPP04 may support its function in these ecological processes, particularly if it possesses the necessary metabolic pathways to degrade pollutants or contribute to nutrient availability. Understanding the genomic characteristics of Pseudomonas sp. NFPP04 can provide insights into its ecological roles and potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. NFPP04
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. NFPP04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. NFPP04 genome assembly, contig:

Gene Summary

Adenine Count

1208917 bp

Thymine Count

1243632 bp

Guanine Count

1944715 bp

Cytosine Count

1886809 bp

Genome Length

6285678 bp

Protein-coding Genes

5594 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamate synthase (nadph) large subunitSAMN03159342_00448Not AvailableNegative492799 - 49441858987.1
fibronectin type iii-like domain-containing proteinSAMN03159342_00449Not AvailableNegative494501 - 49488113344.7
large subunit ribosomal protein l31SAMN03159342_00450Not AvailablePositive495040 - 4953129887.45
response regulator receiver domain-containing proteinSAMN03159342_00451Not AvailableNegative495334 - 49671351160.2
histidine kinase-, dna gyrase b-, and hsp90-like atpaseSAMN03159342_00452Not AvailableNegative496710 - 49852466903.4
cytochrome c peroxidaseSAMN03159342_00453Not AvailableNegative498521 - 49948335324.0
diguanylate cyclase (ggdef) domain-containing proteinSAMN03159342_00454Not AvailableNegative499509 - 50138369842.8
response regulator c-di-gmp phosphodiesterase, rpfg family, contains rec and hd-gyp domainsSAMN03159342_00455Not AvailablePositive501603 - 50290448516.7
hypothetical proteinSAMN03159342_00456Not AvailableNegative502931 - 507094153751.0
adp-ribose pyrophosphatase yjhb, nudix familySAMN03159342_00457Not AvailablePositive507269 - 50769115049.1

Displaying genes 451 – 460 of 5656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.