Pseudomonas sp. NFPP04

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. NFPP04 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The genomic information for this strain is cataloged under the accession number FOQS00000000.1, which provides a basis for further studies and comparisons with other Pseudomonas species. Pseudomonas species are known for their metabolic diversity, enabling them to thrive in a wide range of ecological niches, including soil, water, and as plant symbionts. The single replicon feature of NFPP04 could suggest a potential for rapid replication and adaptation, which is a common trait among bacteria in dynamic environments. Moreover, Pseudomonas species are often recognized for their role in bioremediation and nutrient cycling within ecosystems. The traits of NFPP04 may support its function in these ecological processes, particularly if it possesses the necessary metabolic pathways to degrade pollutants or contribute to nutrient availability. Understanding the genomic characteristics of Pseudomonas sp. NFPP04 can provide insights into its ecological roles and potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. NFPP04
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. NFPP04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. NFPP04 genome assembly, contig:

Gene Summary

Adenine Count

1208917 bp

Thymine Count

1243632 bp

Guanine Count

1944715 bp

Cytosine Count

1886809 bp

Genome Length

6285678 bp

Protein-coding Genes

5594 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
predicted arabinose efflux permease, mfs familySAMN03159342_03811Not AvailableNegative4247989 - 424921542482.6
cold shock protein (beta-ribbon, cspa family)SAMN03159342_03812Not AvailableNegative4249471 - 42496837919.14
cold shock protein (beta-ribbon, cspa family)SAMN03159342_03813Not AvailableNegative4249752 - 42499647723.13
hypothetical proteinSAMN03159342_03814Not AvailableNegative4250249 - 425217470108.2
his kinase a (phospho-acceptor) domain-containing proteinSAMN03159342_03815Not AvailableNegative4252164 - 425302731739.8
anti-sigma regulatory factor (ser/thr protein kinase)SAMN03159342_03816Not AvailableNegative4253020 - 425402735501.0
serine/threonine-protein kinase rsbtSAMN03159342_03817Not AvailableNegative4254018 - 425442214577.7
rsbt antagonist protein rsbsSAMN03159342_03818Not AvailableNegative4254419 - 425478113133.4
rsbt co-antagonist protein rsbrSAMN03159342_03819Not AvailableNegative4254784 - 425563530951.6
dna-binding transcriptional regulator, lysr familySAMN03159342_03820Not AvailablePositive4255821 - 425678335607.5

Displaying genes 3781 – 3790 of 5656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.