Pseudomonas sp. NFPP04

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. NFPP04 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The genomic information for this strain is cataloged under the accession number FOQS00000000.1, which provides a basis for further studies and comparisons with other Pseudomonas species. Pseudomonas species are known for their metabolic diversity, enabling them to thrive in a wide range of ecological niches, including soil, water, and as plant symbionts. The single replicon feature of NFPP04 could suggest a potential for rapid replication and adaptation, which is a common trait among bacteria in dynamic environments. Moreover, Pseudomonas species are often recognized for their role in bioremediation and nutrient cycling within ecosystems. The traits of NFPP04 may support its function in these ecological processes, particularly if it possesses the necessary metabolic pathways to degrade pollutants or contribute to nutrient availability. Understanding the genomic characteristics of Pseudomonas sp. NFPP04 can provide insights into its ecological roles and potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. NFPP04
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. NFPP04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. NFPP04 genome assembly, contig:

Gene Summary

Adenine Count

1208917 bp

Thymine Count

1243632 bp

Guanine Count

1944715 bp

Cytosine Count

1886809 bp

Genome Length

6285678 bp

Protein-coding Genes

5594 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative iron-dependent peroxidaseSAMN03159342_03107Not AvailableNegative3460325 - 346128734838.4
hypothetical proteinSAMN03159342_03108Not AvailableNegative3461338 - 346215630845.6
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunitSAMN03159342_03109Not AvailableNegative3462158 - 346335742662.6
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunitSAMN03159342_03110Not AvailableNegative3463360 - 346368011800.0
fatty acid desaturaseSAMN03159342_03111Not AvailableNegative3463710 - 346480441760.4
laci family transcriptional regulatorSAMN03159342_03112Not AvailablePositive3464967 - 346601037231.8
transcriptional regulator containing pas, aaa-type atpase, and dna-binding fis domainsSAMN03159342_03113Not AvailableNegative3466189 - 346815071257.4
myo-inositol 2-dehydrogenase / d-chiro-inositol 1-dehydrogenaseSAMN03159342_03114Not AvailablePositive3468336 - 346934035408.3
hydroxypyruvate isomeraseSAMN03159342_03115Not AvailablePositive3469337 - 347011627681.1
inositol transport system substrate-binding proteinSAMN03159342_03116Not AvailablePositive3470136 - 347106233472.3

Displaying genes 3081 – 3090 of 5656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.