Pseudomonas sp. NFPP04

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. NFPP04 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The genomic information for this strain is cataloged under the accession number FOQS00000000.1, which provides a basis for further studies and comparisons with other Pseudomonas species. Pseudomonas species are known for their metabolic diversity, enabling them to thrive in a wide range of ecological niches, including soil, water, and as plant symbionts. The single replicon feature of NFPP04 could suggest a potential for rapid replication and adaptation, which is a common trait among bacteria in dynamic environments. Moreover, Pseudomonas species are often recognized for their role in bioremediation and nutrient cycling within ecosystems. The traits of NFPP04 may support its function in these ecological processes, particularly if it possesses the necessary metabolic pathways to degrade pollutants or contribute to nutrient availability. Understanding the genomic characteristics of Pseudomonas sp. NFPP04 can provide insights into its ecological roles and potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. NFPP04
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. NFPP04
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. NFPP04 genome assembly, contig:

Gene Summary

Adenine Count

1208917 bp

Thymine Count

1243632 bp

Guanine Count

1944715 bp

Cytosine Count

1886809 bp

Genome Length

6285678 bp

Protein-coding Genes

5594 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-glutaminaseSAMN03159342_02814Not AvailablePositive3099169 - 310007732382.7
glycine/d-amino acid oxidaseSAMN03159342_02815Not AvailableNegative3100291 - 310155944708.7
polar amino acid transport system atp-binding proteinSAMN03159342_02816Not AvailableNegative3101556 - 310230827434.3
polar amino acid transport system permease proteinSAMN03159342_02817Not AvailableNegative3102305 - 310297324585.0
polar amino acid transport system substrate-binding proteinSAMN03159342_02818Not AvailableNegative3102970 - 310375227954.8
transcriptional regulator, iclr familySAMN03159342_02819Not AvailablePositive3103968 - 310474728344.9
Trna-lysNot AvailableNot AvailablePositive3105055 - 3105129Not Available
hypothetical proteinSAMN03159342_02821Not AvailablePositive3105182 - 310744083405.3
carboxynorspermidine dehydrogenaseSAMN03159342_02822Not AvailableNegative3107730 - 310892943829.0
carboxynorspermidine decarboxylaseSAMN03159342_02823Not AvailableNegative3109003 - 311010040976.9

Displaying genes 2791 – 2800 of 5656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.