Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix hemicellulosilytica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | biogas reactor; digestive tract; microbial mat |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
961098 bp
Thymine Count
961530 bp
Guanine Count
557161 bp
Cytosine Count
556822 bp
Genome Length
3036611 bp
Protein-coding Genes
2542 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| agmatinase | HHT355_0807 | Not Available | Negative | 907437 - 908288 | 31757.7 |
| spermidine synthase | HHT355_0808 | Not Available | Negative | 908281 - 909126 | 32445.9 |
| arginine decarboxylase | HHT355_0809 | Not Available | Negative | 909263 - 910744 | 54579.1 |
| s-adenosylmethionine decarboxylase proenzyme | HHT355_0810 | Not Available | Negative | 910756 - 911580 | 31817.7 |
| putative secreted protein | HHT355_0811 | Not Available | Positive | 911963 - 913309 | 51391.6 |
| putative membrane protein | HHT355_0812 | Not Available | Negative | 913306 - 914184 | 32931.2 |
| putative membrane protein | HHT355_0813 | Not Available | Positive | 914638 - 915495 | 31030.3 |
| hypothetical protein | HHT355_0814 | Not Available | Positive | 915714 - 916610 | 32639.7 |
| hypothetical protein | HHT355_0815 | Not Available | Positive | 916693 - 917493 | 29690.6 |
| putative membrane protein | HHT355_0816 | Not Available | Positive | 917723 - 918004 | 10912.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
