Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix hemicellulosilytica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | biogas reactor; digestive tract; microbial mat |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
961098 bp
Thymine Count
961530 bp
Guanine Count
557161 bp
Cytosine Count
556822 bp
Genome Length
3036611 bp
Protein-coding Genes
2542 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycerate kinase | HHT355_0507 | Not Available | Positive | 580137 - 581330 | 42686.5 |
| triosephosphate isomerase | HHT355_0508 | Not Available | Positive | 581605 - 582351 | 27186.9 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | HHT355_0509 | Not Available | Positive | 582399 - 583943 | 57327.6 |
| hypothetical protein | HHT355_0510 | Not Available | Positive | 584016 - 584255 | 8547.78 |
| ribonuclease r | HHT355_0511 | Not Available | Positive | 584702 - 586834 | 81719.1 |
| ssra-binding protein | HHT355_0512 | Not Available | Positive | 586836 - 587297 | 17960.2 |
| Tmrna,resume consensus sequence (at 85): tataaacgcaaacgataa | Not Available | Not Available | Positive | 587461 - 587808 | Not Available |
| hypothetical protein | HHT355_0513 | Not Available | Positive | 588089 - 588754 | 23679.8 |
| putative l-serine dehydratase, alpha chain | HHT355_0514 | Not Available | Positive | 588779 - 589654 | 30400.1 |
| n-(5'-phosphoribosyl)anthranilate isomerase | HHT355_0515 | Not Available | Negative | 589759 - 590379 | 23123.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
