Herbinix hemicellulosilytica

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Herbinix

Description

Herbinix hemicellulosilytica is a Gram-positive, anaerobic bacterium. This organism is notable for its ability to thrive in environments lacking oxygen, which suggests it plays a role in anaerobic processes, potentially in the degradation of organic materials. H. hemicellulosilytica possesses a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival in specific ecological niches. The accession number for this bacterium is CVTD000000000.2, which allows for its identification in genomic databases and provides a reference for further research. The anaerobic nature of H. hemicellulosilytica implies it may contribute to various biochemical cycles, particularly in environments rich in plant material, where hemicellulose is a significant component. Its enzymatic capabilities could facilitate the breakdown of hemicellulose, leading to the release of simpler sugars that can be utilized by other microorganisms. This interaction highlights the potential ecological role of H. hemicellulosilytica in nutrient cycling and organic matter decomposition within anaerobic ecosystems. In summary, Herbinix hemicellulosilytica’s Gram-positive, anaerobic characteristics and its unique genomic structure underscore its importance in the degradation of hemicellulose and its potential contributions to ecological processes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusHerbinix
SpeciesHerbinix hemicellulosilytica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatbiogas reactor; digestive tract; microbial mat
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbinix hemicellulosilytica genome assembly TUM3/55, contig

Gene Summary

Adenine Count

961098 bp

Thymine Count

961530 bp

Guanine Count

557161 bp

Cytosine Count

556822 bp

Genome Length

3036611 bp

Protein-coding Genes

2542 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative abc transporter atp-binding protein ywjaHHT355_1976Not AvailableNegative2209217 - 221096265719.2
6-phosphofructokinaseHHT355_1977Not AvailableNegative2210987 - 221196735507.8
dna polymerase iii subunit alphaHHT355_1978Not AvailableNegative2212014 - 2215493132252.0
hypothetical proteinHHT355_1979Not AvailableNegative2215710 - 221714954976.0
hypothetical proteinHHT355_1980Not AvailableNegative2217302 - 22175569119.99
putative sporulation transcription regulator whiaHHT355_1981Not AvailableNegative2217531 - 221851137047.0
upf0042 nucleotide-binding proteinHHT355_1982Not AvailableNegative2218537 - 221938832414.8
udp-n-acetylenolpyruvoylglucosamine reductaseHHT355_1983Not AvailableNegative2219406 - 222032633715.8
hypothetical proteinHHT355_1984Not AvailableNegative2220383 - 222132133265.1
hpr kinase/phosphorylaseHHT355_1985Not AvailableNegative2221362 - 222230335749.7

Displaying genes 1981 – 1990 of 2631 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.