Herbinix hemicellulosilytica

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Herbinix

Description

Herbinix hemicellulosilytica is a Gram-positive, anaerobic bacterium. This organism is notable for its ability to thrive in environments lacking oxygen, which suggests it plays a role in anaerobic processes, potentially in the degradation of organic materials. H. hemicellulosilytica possesses a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival in specific ecological niches. The accession number for this bacterium is CVTD000000000.2, which allows for its identification in genomic databases and provides a reference for further research. The anaerobic nature of H. hemicellulosilytica implies it may contribute to various biochemical cycles, particularly in environments rich in plant material, where hemicellulose is a significant component. Its enzymatic capabilities could facilitate the breakdown of hemicellulose, leading to the release of simpler sugars that can be utilized by other microorganisms. This interaction highlights the potential ecological role of H. hemicellulosilytica in nutrient cycling and organic matter decomposition within anaerobic ecosystems. In summary, Herbinix hemicellulosilytica’s Gram-positive, anaerobic characteristics and its unique genomic structure underscore its importance in the degradation of hemicellulose and its potential contributions to ecological processes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusHerbinix
SpeciesHerbinix hemicellulosilytica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatbiogas reactor; digestive tract; microbial mat
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbinix hemicellulosilytica genome assembly TUM3/55, contig

Gene Summary

Adenine Count

961098 bp

Thymine Count

961530 bp

Guanine Count

557161 bp

Cytosine Count

556822 bp

Genome Length

3036611 bp

Protein-coding Genes

2542 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chaperone protein clpbHHT355_1956Not AvailableNegative2184495 - 218693690422.0
putative atp:guanido phosphotransferase bh0102HHT355_1957Not AvailableNegative2186980 - 218801439455.5
hypothetical proteinHHT355_1958Not AvailableNegative2188007 - 218855220688.6
hypothetical proteinHHT355_1959Not AvailableNegative2188558 - 218893214443.5
hypothetical proteinHHT355_1960Not AvailableNegative2189044 - 219027646059.8
hypothetical proteinHHT355_1961Not AvailableNegative2190515 - 2193262100547.0
phosphoribosylamine-glycine ligaseHHT355_1962Not AvailableNegative2193735 - 219500646416.9
hypothetical proteinHHT355_1963Not AvailableNegative2195074 - 219570923371.4
phosphoribosylformylglycinamidine cyclo-ligaseHHT355_1964Not AvailableNegative2195703 - 219672837367.5
putative membrane proteinHHT355_1965Not AvailableNegative2196864 - 219843257936.2

Displaying genes 1961 – 1970 of 2631 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.