Herbinix hemicellulosilytica

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Herbinix

Description

Herbinix hemicellulosilytica is a Gram-positive, anaerobic bacterium. This organism is notable for its ability to thrive in environments lacking oxygen, which suggests it plays a role in anaerobic processes, potentially in the degradation of organic materials. H. hemicellulosilytica possesses a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival in specific ecological niches. The accession number for this bacterium is CVTD000000000.2, which allows for its identification in genomic databases and provides a reference for further research. The anaerobic nature of H. hemicellulosilytica implies it may contribute to various biochemical cycles, particularly in environments rich in plant material, where hemicellulose is a significant component. Its enzymatic capabilities could facilitate the breakdown of hemicellulose, leading to the release of simpler sugars that can be utilized by other microorganisms. This interaction highlights the potential ecological role of H. hemicellulosilytica in nutrient cycling and organic matter decomposition within anaerobic ecosystems. In summary, Herbinix hemicellulosilytica’s Gram-positive, anaerobic characteristics and its unique genomic structure underscore its importance in the degradation of hemicellulose and its potential contributions to ecological processes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusHerbinix
SpeciesHerbinix hemicellulosilytica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatbiogas reactor; digestive tract; microbial mat
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbinix hemicellulosilytica genome assembly TUM3/55, contig

Gene Summary

Adenine Count

961098 bp

Thymine Count

961530 bp

Guanine Count

557161 bp

Cytosine Count

556822 bp

Genome Length

3036611 bp

Protein-coding Genes

2542 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHHT355_1664Not AvailableNegative1874068 - 187449916169.7
cysteine-trna ligaseHHT355_1665Not AvailableNegative1874484 - 187588753973.4
serine acetyltransferaseHHT355_1666Not AvailableNegative1875936 - 187662825439.2
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseHHT355_1667Not AvailableNegative1877318 - 187786919464.7
hypothetical proteinHHT355_1668Not AvailableNegative1877966 - 187952556216.0
Trna-metNot AvailableNot AvailablePositive1879807 - 1879880Not Available
pyruvate formate-lyase 1-activating enzymeHHT355_1670Not AvailableNegative1880142 - 188088227996.9
formate acetyltransferaseHHT355_1671Not AvailableNegative1881018 - 188324384198.6
hypothetical proteinHHT355_1672Not AvailableNegative1883368 - 18836018910.85
hypothetical proteinHHT355_1673Not AvailablePositive1883790 - 188570072110.4

Displaying genes 1711 – 1720 of 2631 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.