Desulfovibrio sp. TomC

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. TomC is a Gram-negative bacterium notable for its motility, as it possesses flagella. This feature allows for active movement in its environment, which may play a role in its ecological interactions and nutrient acquisition. The organism has a single replicon, indicating a streamlined genomic organization that may be advantageous for its metabolic efficiency. The accession number for Desulfovibrio sp. TomC is JSEH00000000.1, which is essential for researchers seeking to access its genomic data and further investigate its characteristics. Desulfovibrio species are known for their role in sulfate reduction, a critical process in various biogeochemical cycles. The presence of Desulfovibrio sp. TomC in specific ecological niches suggests it may contribute to the degradation of organic materials in anaerobic environments, thereby influencing nutrient cycling and ecosystem dynamics. This function is particularly significant in environments such as sediments and wetlands, where sulfate-reducing bacteria play a crucial role in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio sp. TomC
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfovibrio sp. TomC contig00443, whole genome shotgun sequence.

Gene Summary

Adenine Count

1037833 bp

Thymine Count

1034623 bp

Guanine Count

1629877 bp

Cytosine Count

1605873 bp

Genome Length

5308211 bp

Protein-coding Genes

4555 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphonate abc transporter phosphate-binding periplasmic componentNY78_0711Not AvailableNegative764894 - 76582934465.4
hypothetical proteinNY78_0712Not AvailableNegative765860 - 76641719964.2
putative membrane proteinNY78_0713Not AvailableNegative766486 - 76764640909.7
hypothetical proteinNY78_0714Not AvailablePositive768246 - 76886321651.8
hypothetical proteinNY78_0715Not AvailableNegative769077 - 76969122417.1
hcp transcriptional regulator hcpr (crp/fnr family)NY78_0716Not AvailableNegative769694 - 77037123593.8
formate dehydrogenase o beta subunitNY78_0717Not AvailablePositive770563 - 77154334196.2
iron-sulfur cluster-binding proteinNY78_0718Not AvailablePositive771536 - 77200016698.9
rubrerythrinNY78_0719Not AvailableNegative772553 - 77312821263.8
alkyl hydroperoxide reductase subunit c-like proteinNY78_0720Not AvailableNegative773296 - 77390121649.2

Displaying genes 721 – 730 of 4623 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.