Desulfovibrio sp. TomC

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. TomC is a Gram-negative bacterium notable for its motility, as it possesses flagella. This feature allows for active movement in its environment, which may play a role in its ecological interactions and nutrient acquisition. The organism has a single replicon, indicating a streamlined genomic organization that may be advantageous for its metabolic efficiency. The accession number for Desulfovibrio sp. TomC is JSEH00000000.1, which is essential for researchers seeking to access its genomic data and further investigate its characteristics. Desulfovibrio species are known for their role in sulfate reduction, a critical process in various biogeochemical cycles. The presence of Desulfovibrio sp. TomC in specific ecological niches suggests it may contribute to the degradation of organic materials in anaerobic environments, thereby influencing nutrient cycling and ecosystem dynamics. This function is particularly significant in environments such as sediments and wetlands, where sulfate-reducing bacteria play a crucial role in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio sp. TomC
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfovibrio sp. TomC contig00443, whole genome shotgun sequence.

Gene Summary

Adenine Count

1037833 bp

Thymine Count

1034623 bp

Guanine Count

1629877 bp

Cytosine Count

1605873 bp

Genome Length

5308211 bp

Protein-coding Genes

4555 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanyl-d-alanine carboxypeptidaseNY78_3081Not AvailableNegative3391317 - 339240838674.5
hypothetical proteinNY78_3082Not AvailableNegative3392648 - 339382343056.8
hydroxyacylglutathione hydrolaseNY78_3083Not AvailablePositive3393907 - 339453322379.9
acid sphingomyelinase-like phosphodiesterase 3b precursorNY78_3084Not AvailablePositive3394676 - 339599846783.4
thermostable carboxypeptidase 1NY78_3085Not AvailableNegative3396154 - 339766854196.3
peptidoglycan-binding lysmNY78_3086Not AvailableNegative3397665 - 339833023662.1
molybdenum abc transporter, periplasmic molybdenum-binding protein modaNY78_3087Not AvailableNegative3398407 - 339916826352.9
hypothetical proteinNY78_3088Not AvailableNegative3399275 - 339993724219.3
hypothetical proteinNY78_3089Not AvailableNegative3399989 - 340031812451.7
tryptophan synthase beta chain likeNY78_3090Not AvailablePositive3400786 - 340212948800.8

Displaying genes 3111 – 3120 of 4623 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.