Desulfovibrio sp. TomC

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. TomC is a Gram-negative bacterium notable for its motility, as it possesses flagella. This feature allows for active movement in its environment, which may play a role in its ecological interactions and nutrient acquisition. The organism has a single replicon, indicating a streamlined genomic organization that may be advantageous for its metabolic efficiency. The accession number for Desulfovibrio sp. TomC is JSEH00000000.1, which is essential for researchers seeking to access its genomic data and further investigate its characteristics. Desulfovibrio species are known for their role in sulfate reduction, a critical process in various biogeochemical cycles. The presence of Desulfovibrio sp. TomC in specific ecological niches suggests it may contribute to the degradation of organic materials in anaerobic environments, thereby influencing nutrient cycling and ecosystem dynamics. This function is particularly significant in environments such as sediments and wetlands, where sulfate-reducing bacteria play a crucial role in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio sp. TomC
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfovibrio sp. TomC contig00443, whole genome shotgun sequence.

Gene Summary

Adenine Count

1037833 bp

Thymine Count

1034623 bp

Guanine Count

1629877 bp

Cytosine Count

1605873 bp

Genome Length

5308211 bp

Protein-coding Genes

4555 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative l-lactate dehydrogenase, fe-s oxidoreductase subunit ykgeNY78_3051Not AvailablePositive3359547 - 336026925367.9
putative l-lactate dehydrogenase, iron-sulfur cluster-binding subunit ykgfNY78_3052Not AvailablePositive3360266 - 336167850093.7
hypothetical proteinNY78_3053Not AvailablePositive3361675 - 336233422658.5
shikimate kinase iNY78_3054Not AvailableNegative3362426 - 336295019166.1
rna polymerase, sigma-24 subunit, ecf subfamilyNY78_3055Not AvailablePositive3363154 - 336372320970.4
hypothetical proteinNY78_3056Not AvailablePositive3363752 - 336412014047.9
putative abc transporter, permease proteinNY78_3057Not AvailableNegative3364130 - 336667687200.6
methyl-accepting chemotaxis protein i (serine chemoreceptor protein)NY78_3058Not AvailablePositive3366879 - 336890972067.5
beta-1,3(4)-glucanase precursorNY78_3059Not AvailableNegative3369008 - 337059455631.8
macrolide export atp-binding/permease protein macbNY78_3060Not AvailableNegative3370983 - 337218842946.6

Displaying genes 3081 – 3090 of 4623 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.