Desulfovibrio sp. TomC

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. TomC is a Gram-negative bacterium notable for its motility, as it possesses flagella. This feature allows for active movement in its environment, which may play a role in its ecological interactions and nutrient acquisition. The organism has a single replicon, indicating a streamlined genomic organization that may be advantageous for its metabolic efficiency. The accession number for Desulfovibrio sp. TomC is JSEH00000000.1, which is essential for researchers seeking to access its genomic data and further investigate its characteristics. Desulfovibrio species are known for their role in sulfate reduction, a critical process in various biogeochemical cycles. The presence of Desulfovibrio sp. TomC in specific ecological niches suggests it may contribute to the degradation of organic materials in anaerobic environments, thereby influencing nutrient cycling and ecosystem dynamics. This function is particularly significant in environments such as sediments and wetlands, where sulfate-reducing bacteria play a crucial role in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio sp. TomC
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfovibrio sp. TomC contig00443, whole genome shotgun sequence.

Gene Summary

Adenine Count

1037833 bp

Thymine Count

1034623 bp

Guanine Count

1629877 bp

Cytosine Count

1605873 bp

Genome Length

5308211 bp

Protein-coding Genes

4555 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinNY78_2971Not AvailablePositive3254354 - 32544764540.47
dna polymerase iNY78_2972Not AvailableNegative3255655 - 3260313177115.0
bacteriophage protein gp37NY78_2973Not AvailableNegative3260413 - 326100923309.4
sensory box histidine kinase/response regulatorNY78_2974Not AvailablePositive3262525 - 3266445144753.0
branched-chain amino acid abc transporter, amino acid-binding proteinNY78_2975Not AvailablePositive3266442 - 326774346468.3
hypothetical proteinNY78_2976Not AvailablePositive3267727 - 326963469722.9
pas/pac sensor hybrid histidine kinaseNY78_2977Not AvailablePositive3270629 - 327323296472.0
hypothetical proteinNY78_2978Not AvailablePositive3273941 - 327458523757.6
response regulator receiver sensor signal transduction histidine kinaseNY78_2979Not AvailablePositive3274569 - 327569341976.6
hypothetical proteinNY78_2980Not AvailableNegative3277198 - 32774168300.14

Displaying genes 3001 – 3010 of 4623 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.