Desulfovibrio sp. TomC

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. TomC is a Gram-negative bacterium notable for its motility, as it possesses flagella. This feature allows for active movement in its environment, which may play a role in its ecological interactions and nutrient acquisition. The organism has a single replicon, indicating a streamlined genomic organization that may be advantageous for its metabolic efficiency. The accession number for Desulfovibrio sp. TomC is JSEH00000000.1, which is essential for researchers seeking to access its genomic data and further investigate its characteristics. Desulfovibrio species are known for their role in sulfate reduction, a critical process in various biogeochemical cycles. The presence of Desulfovibrio sp. TomC in specific ecological niches suggests it may contribute to the degradation of organic materials in anaerobic environments, thereby influencing nutrient cycling and ecosystem dynamics. This function is particularly significant in environments such as sediments and wetlands, where sulfate-reducing bacteria play a crucial role in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio sp. TomC
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfovibrio sp. TomC contig00443, whole genome shotgun sequence.

Gene Summary

Adenine Count

1037833 bp

Thymine Count

1034623 bp

Guanine Count

1629877 bp

Cytosine Count

1605873 bp

Genome Length

5308211 bp

Protein-coding Genes

4555 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fad/fmn-containing dehydrogenaseNY78_2841Not AvailableNegative3096026 - 309739347199.3
abc-type amino acid transport system, permease componentNY78_2842Not AvailableNegative3097399 - 309809125013.2
cell division transporter, atp-binding protein ftseNY78_2843Not AvailableNegative3098108 - 309889628236.5
polar amino acid abc transporter, inner membrane subunitNY78_2844Not AvailableNegative3098898 - 309961125458.9
extracellular solute-binding protein, family 3NY78_2845Not AvailableNegative3099687 - 310043927294.3
diguanylate cyclase (ggdef domain) with pas/pac sensorNY78_2846Not AvailableNegative3100637 - 310155432811.0
permease of the drug/metabolite transporter (dmt) superfamilyNY78_2847Not AvailableNegative3101623 - 310251331234.2
glutamate synthase small subunit gltdNY78_2848Not AvailablePositive3102637 - 310374039009.3
fe-s-cluster-containing hydrogenase components 1NY78_2849Not AvailablePositive3103975 - 310449619001.3
tpr repeat:nb-arc:peptidase c14, caspase catalytic subunit p20:tetratricopeptide tpr_3:tetratricopeptide tpr_4:tetratricopeptide tpr_4NY78_2850Not AvailablePositive3104611 - 310522521903.4

Displaying genes 2871 – 2880 of 4623 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.