Desulfovibrio sp. TomC

Gram-negative

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Desulfovibrio

Description

Desulfovibrio sp. TomC is a Gram-negative bacterium notable for its motility, as it possesses flagella. This feature allows for active movement in its environment, which may play a role in its ecological interactions and nutrient acquisition. The organism has a single replicon, indicating a streamlined genomic organization that may be advantageous for its metabolic efficiency. The accession number for Desulfovibrio sp. TomC is JSEH00000000.1, which is essential for researchers seeking to access its genomic data and further investigate its characteristics. Desulfovibrio species are known for their role in sulfate reduction, a critical process in various biogeochemical cycles. The presence of Desulfovibrio sp. TomC in specific ecological niches suggests it may contribute to the degradation of organic materials in anaerobic environments, thereby influencing nutrient cycling and ecosystem dynamics. This function is particularly significant in environments such as sediments and wetlands, where sulfate-reducing bacteria play a crucial role in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfovibrio
SpeciesDesulfovibrio sp. TomC
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Desulfovibrio sp. TomC contig00443, whole genome shotgun sequence.

Gene Summary

Adenine Count

1037833 bp

Thymine Count

1034623 bp

Guanine Count

1629877 bp

Cytosine Count

1605873 bp

Genome Length

5308211 bp

Protein-coding Genes

4555 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycerol uptake facilitator proteinNY78_1122Not AvailablePositive1228400 - 122919127652.3
glycerol kinaseNY78_1123Not AvailablePositive1229188 - 123068154322.8
crossover junction endodeoxyribonuclease ruvcNY78_1124Not AvailablePositive1230898 - 123141017893.7
holliday junction dna helicase ruvaNY78_1125Not AvailablePositive1231407 - 123201520865.3
holliday junction dna helicase ruvbNY78_1126Not AvailablePositive1232018 - 123301636234.2
thymidylate synthase thyxNY78_1127Not AvailablePositive1233036 - 123378227698.3
hypothetical proteinNY78_1128Not AvailablePositive1234087 - 12342455587.75
chromosomal replication initiator protein dnaaNY78_1129Not AvailablePositive1234287 - 123565150902.6
hypothetical proteinNY78_1130Not AvailablePositive1236080 - 12362928187.63
hypothetical proteinNY78_1131Not AvailablePositive1236680 - 12368174665.61

Displaying genes 1131 – 1140 of 4623 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.