Limnochorda pilosa str. HC45

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Limnochordia

Order

Limnochordales

Family

Limnochordaceae

Genus

Limnochorda

Description

Limnochorda pilosa str. HC45 is an anaerobic bacterium characterized by a single replicon, which is a notable trait for its genetic structure. The organism is cataloged under accession number NZ_AP014924.1, providing a reference for further genetic and taxonomic studies. Anaerobic bacteria, such as Limnochorda pilosa str. HC45, thrive in environments devoid of oxygen, which influences their ecological niches and metabolic processes. This adaptation allows them to inhabit various anaerobic environments, potentially including sediments, soils, or other oxygen-limited habitats. The presence of a single replicon suggests a streamlined genetic organization, which may contribute to its adaptability and efficiency in anaerobic conditions. Understanding the genetic makeup of Limnochorda pilosa str. HC45 could offer insights into its evolutionary strategies and ecological roles, particularly in biogeochemical cycles where oxygen is a limiting factor. In summary, Limnochorda pilosa str. HC45 exemplifies the adaptations of anaerobic bacteria to thrive without oxygen, with its single replicon indicative of a potentially specialized genetic framework. Further studies on this organism could elucidate its role in anaerobic ecosystems, contributing to our understanding of microbial diversity and function in oxygen-depleted environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassLimnochordia
OrderLimnochordales
FamilyLimnochordaceae
GenusLimnochorda
SpeciesLimnochorda pilosa
StrainHC45

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limnochorda pilosa strain HC45 chromosome, complete genome.

Gene Summary

Adenine Count

578475 bp

Thymine Count

576902 bp

Guanine Count

1319982 bp

Cytosine Count

1341677 bp

Genome Length

3817036 bp

Protein-coding Genes

3545 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yqhv family proteinLIP_RS00055Not AvailableNegative13245 - 135119286.04
trpb-like pyridoxal phosphate-dependent enzymeLIP_RS00060Q8TL44Positive13898 - 1526549337.6
3-isopropylmalate dehydratase large subunitLIP_RS00065Q67MJ2Positive15402 - 1682951454.7
3-isopropylmalate dehydratase small subunitLIP_RS00070Q67MJ3Positive16842 - 1743522433.8
serine hydroxymethyltransferaseLIP_RS00075Q39V87Positive17503 - 1878646115.5
2-oxoacid:acceptor oxidoreductase family proteinLIP_RS00080Q8L3B3Positive19049 - 2007137153.7
thiamine pyrophosphate-dependent enzymeLIP_RS00085O05651Positive20071 - 2236584726.2
mfs transporterLIP_RS00090Not AvailableNegative22491 - 2372943686.6
glycosyltransferase family 4 proteinLIP_RS00095Not AvailablePositive24257 - 2566950160.1
serine--trna ligaseLIP_RS00100Q5L3Y0Positive25972 - 2725848117.3

Displaying genes 11 – 20 of 3603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

197 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000538D-arabinonateC5H9O6Chemical structure of D-arabinonateNot available
Average165.122Da
Monoisotopic165.04046159Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da

Displaying 1–10 of 197 metabolites

Health Effects

No health effects information available for this bacterium.