Limnochorda pilosa str. HC45

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Limnochordia

Order

Limnochordales

Family

Limnochordaceae

Genus

Limnochorda

Description

Taxonomy

KingdomBacillati
PhylumBacillota
ClassLimnochordia
OrderLimnochordales
FamilyLimnochordaceae
GenusLimnochorda
SpeciesLimnochorda pilosa
StrainHC45

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limnochorda pilosa str. HC45

NZ_AP014924.1

Gene Summary

Adenine Count

578475 bp

Thymine Count

576902 bp

Guanine Count

1319982 bp

Cytosine Count

1341677 bp

Genome Length

3817036 bp

Protein-coding Genes

3545 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaLIP_RS00005Q9RCA2+201 - 165853766.1
dna polymerase iii subunit betaLIP_RS00010P72856+1909 - 308742445.4
rna-binding s4 domain-containing proteinLIP_RS00015Not Available+3109 - 33458457.41
dna replication/repair protein recfLIP_RS00020Q5WM28+3380 - 450441394.5
extracellular matrix regulator rembLIP_RS00025Not Available+4546 - 47978859.73
dna gyrase subunit bLIP_RS00030O50627+4930 - 8394128213.0
dna gyrase subunit aLIP_RS00035P94605+8488 - 1094791949.1
Trna-alaNot AvailableNot Available+11106 - 11181Not Available
ylbf family regulatorLIP_RS00045Not Available+11289 - 1178618302.4
asparagine--trna ligaseLIP_RS00050A9WA97+11830 - 1313449457.3

Displaying genes 1 – 10 of 3603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

197 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000538D-arabinonateC5H9O6Chemical structure of D-arabinonateNot available
Average165.122Da
Monoisotopic165.04046159Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da

Displaying 1–10 of 197 metabolites