Leptolyngbya sp. NIES-2104

Filamentous

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Leptolyngbyales

Family

Leptolyngbyaceae

Genus

Leptolyngbya

Description

Leptolyngbya sp. NIES-2104 is a filamentous cyanobacterium characterized by its presence in terrestrial environments. This species is notable for having a single replicon, which is a significant trait for its genetic stability and replication. The specific accession number associated with Leptolyngbya sp. NIES-2104 is BBWW00000000.1, which provides a reference point for genomic studies and further research. The filamentous shape of Leptolyngbya sp. NIES-2104 suggests that it may play a role in forming biofilms or contributing to soil structure in terrestrial ecosystems. Filamentous cyanobacteria are known for their ability to fix atmospheric nitrogen, which can enhance soil fertility and support plant growth. This characteristic aligns with the ecological significance of Leptolyngbya sp. NIES-2104, as it may contribute to nutrient cycling in terrestrial habitats. In summary, Leptolyngbya sp. NIES-2104, with its filamentous morphology and single replicon, exemplifies an important component of terrestrial ecosystems. Its potential role in nitrogen fixation and soil health underscores the ecological relevance of this cyanobacterium in supporting biodiversity and promoting ecosystem resilience.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderLeptolyngbyales
FamilyLeptolyngbyaceae
GenusLeptolyngbya
SpeciesLeptolyngbya sp. NIES-2104
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeFilamentous
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Leptolyngbya sp. NIES-2104
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatterrestrial; terrestrial environment; terrestrial environments; terrestrial sample
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Leptolyngbya sp. NIES-2104 DNA, contig: contig5, whole genome

Gene Summary

Adenine Count

1676546 bp

Thymine Count

1680887 bp

Guanine Count

1510828 bp

Cytosine Count

1518046 bp

Genome Length

6386310 bp

Protein-coding Genes

6712 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
anti-sigma regulatory factor (ser/thr protein kinase), essential for photomixotrophic growth, pmgaNIES2104_50560Not AvailableNegative4783275 - 478371816669.1
dnaj-class molecular chaperone cbpaNIES2104_50570P50026Negative4784016 - 478460623225.7
atp-dependent clp protease proteolytic subunitNIES2104_50580P74467Negative4784669 - 478526221921.6
atp-dependent clp protease proteolytic subunitNIES2104_50590Q93AD7Negative4785279 - 478590823010.7
atp-dependent clp protease proteolytic subunitNIES2104_50600P74466Negative4785989 - 478667525290.3
phosphoenolpyruvate carboxylaseNIES2104_50610Not AvailablePositive4786876 - 478737918487.0
phosphoribosylformylglycinamidine synthase, synthetase subunitNIES2104_50620B2IU46Positive4787607 - 478993783073.6
amidophosphoribosyltransferaseNIES2104_50630Q55621Positive4790027 - 479150553823.1
hypothetical proteinNIES2104_50640Not AvailablePositive4791626 - 47917424299.22
putative subunit of nad(p)h:quinone oxidoreductaseNIES2104_50650B0C8S5Negative4791703 - 479204112871.1

Displaying genes 5061 – 5070 of 6777 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

246 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da

Displaying 1–10 of 246 metabolites

Health Effects

No health effects information available for this bacterium.