Draconibacterium sediminis str. JN14CK-3

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Marinilabiliales

Family

Prolixibacteraceae

Genus

Draconibacterium

Description

Draconibacterium sediminis str. JN14CK-3 is a notable bacterium characterized by its single replicon, reflecting a streamlined genetic structure. This strain has been cataloged under the accession number JRHC00000000.1, which serves as its unique identifier in genomic databases. The presence of only one replicon suggests a level of genetic simplicity that may confer advantages in specific ecological niches, potentially allowing for rapid adaptation to environmental changes. This trait is often associated with organisms that thrive in specialized habitats, indicating that D. sediminis may possess unique metabolic pathways or survival strategies tailored to its surroundings. While specific metabolic capabilities and ecological roles of Draconibacterium sediminis str. JN14CK-3 are not detailed in the provided information, the single replicon may imply a focused and efficient genetic repertoire. Such organisms are often involved in biogeochemical cycles within their ecosystems, potentially contributing to nutrient cycling or organic matter decomposition. In summary, Draconibacterium sediminis str. JN14CK-3, with its single replicon and associated accession number, represents a potentially specialized bacterium that may play a significant role in its ecological context, contributing to the dynamics of microbial communities and the broader environmental landscape.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderMarinilabiliales
FamilyProlixibacteraceae
GenusDraconibacterium
SpeciesDraconibacterium sediminis
StrainJN14CK-3

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Draconibacterium sediminis strain JN14CK-3 contig19, whole genome

Gene Summary

Adenine Count

1773551 bp

Thymine Count

1765402 bp

Guanine Count

1257585 bp

Cytosine Count

1195693 bp

Genome Length

5992231 bp

Protein-coding Genes

4126 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-binding proteinLH29_04810Q98RC1Negative1113390 - 111461945014.7
hypothetical proteinLH29_04820Not AvailableNegative1115053 - 111536711035.3
hypothetical proteinLH29_04825Not AvailablePositive1115576 - 111684148298.5
transcriptional regulatorLH29_04830Not AvailablePositive1116844 - 111753626406.8
hypothetical proteinLH29_04835Not AvailableNegative1117792 - 111809410334.3
aspartate ammonia-lyaseLH29_04840P26899Negative1118283 - 111967750621.9
thiamine biosynthesis protein thihLH29_04845P30140Negative1119771 - 112116252102.4
copg family transcriptional regulatorLH29_04850Not AvailableNegative1121198 - 11214438659.55
biotin synthaseLH29_04855Q9X0Z6Positive1121811 - 112289041373.8
sulfate permeaseLH29_04860P55189Negative1123085 - 112469257271.5

Displaying genes 811 – 820 of 4178 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

173 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 173 metabolites

Health Effects

No health effects information available for this bacterium.