Draconibacterium sediminis str. JN14CK-3

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Marinilabiliales

Family

Prolixibacteraceae

Genus

Draconibacterium

Description

Draconibacterium sediminis str. JN14CK-3 is a notable bacterium characterized by its single replicon, reflecting a streamlined genetic structure. This strain has been cataloged under the accession number JRHC00000000.1, which serves as its unique identifier in genomic databases. The presence of only one replicon suggests a level of genetic simplicity that may confer advantages in specific ecological niches, potentially allowing for rapid adaptation to environmental changes. This trait is often associated with organisms that thrive in specialized habitats, indicating that D. sediminis may possess unique metabolic pathways or survival strategies tailored to its surroundings. While specific metabolic capabilities and ecological roles of Draconibacterium sediminis str. JN14CK-3 are not detailed in the provided information, the single replicon may imply a focused and efficient genetic repertoire. Such organisms are often involved in biogeochemical cycles within their ecosystems, potentially contributing to nutrient cycling or organic matter decomposition. In summary, Draconibacterium sediminis str. JN14CK-3, with its single replicon and associated accession number, represents a potentially specialized bacterium that may play a significant role in its ecological context, contributing to the dynamics of microbial communities and the broader environmental landscape.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderMarinilabiliales
FamilyProlixibacteraceae
GenusDraconibacterium
SpeciesDraconibacterium sediminis
StrainJN14CK-3

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Draconibacterium sediminis strain JN14CK-3 contig19, whole genome

Gene Summary

Adenine Count

1773551 bp

Thymine Count

1765402 bp

Guanine Count

1257585 bp

Cytosine Count

1195693 bp

Genome Length

5992231 bp

Protein-coding Genes

4126 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cysteate synthaseLH29_00165Q8TKU7Positive40914 - 4217646001.9
3-deoxy-d-manno-octulosonic acid transferaseLH29_00180Not AvailablePositive46660 - 4789847043.9
ribonucleoside-diphosphate reductaseLH29_00185P9WH76Positive48216 - 5076896188.0
hypothetical proteinLH29_00190Not AvailableNegative50828 - 5136420416.2
glycine cleavage system protein hLH29_00195A0LXS6Negative51589 - 5196913760.0
atp/gtp hydrolaseLH29_00200O67011Positive52202 - 5262416089.9
hypothetical proteinLH29_00205Q5HNJ6Positive52732 - 5394344333.9
hypothetical proteinLH29_00210Not AvailablePositive53960 - 5480832728.5
hypothetical proteinLH29_00215Not AvailablePositive55032 - 5554419713.6
hypothetical proteinLH29_00225Not AvailableNegative57472 - 5802021136.3

Displaying genes 31 – 40 of 4178 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

173 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 173 metabolites

Health Effects

No health effects information available for this bacterium.