Corynebacterium oculi str. NML 130210

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Corynebacteriaceae

Genus

Corynebacterium

Description

Corynebacterium oculi str. NML 130210 is a Gram-positive, non-motile bacterium characterized by its rod-shaped morphology. This organism has a single replicon, indicating a streamlined genomic structure, which may be advantageous for its adaptability in various environments. The strain is cataloged under the accession number LKST00000000.1, providing a reference point for further research and analysis. Corynebacterium species are often associated with various ecological niches and can be found in both environmental and host-associated contexts. Due to their Gram-positive nature, they possess a thick peptidoglycan layer, which can contribute to their resilience against certain environmental stresses. Understanding the specific traits of C. oculi str. NML 130210 can provide insights into its ecological roles, particularly in relation to its habitat and interactions with other microorganisms. The non-motile characteristic of this strain suggests that it may rely on passive dispersal mechanisms or close-contact interactions with other species within its habitat. This could indicate a potential role in biofilm formation or symbiotic relationships where mobility is less critical to survival. Overall, studying C. oculi str. NML 130210 can enhance our understanding of the ecological dynamics of Corynebacterium species and their contributions to microbial communities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyCorynebacteriaceae
GenusCorynebacterium
SpeciesCorynebacterium oculi
StrainNML 130210

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Image of Corynebacterium oculi str. NML 130210
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Corynebacterium oculi str. NML 130210


Gene Summary

Adenine Count

425539 bp

Thymine Count

424051 bp

Guanine Count

784302 bp

Cytosine Count

779981 bp

Genome Length

2413873 bp

Protein-coding Genes

2313 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive55950 - 55984Not Available
IntegraseCocul_00063B6IPE2Positive56294 - 5686920723.1
Hypothetical proteinCocul_00064Not AvailableNegative56866 - 5810743325.3
Hypothetical proteinCocul_00065Not AvailableNegative58104 - 5966658386.8
Putative tape measure proteinCocul_00066Not AvailableNegative59657 - 6180471682.5
Hypothetical proteinCocul_00067Not AvailableNegative61925 - 6222110945.6
Major tail proteinCocul_00068Not AvailableNegative62620 - 6306315527.2
Hypothetical proteinCocul_00069Not AvailableNegative63073 - 6342912587.1
Hypothetical proteinCocul_00070Not AvailableNegative63433 - 6374711020.3
Caudovirus prohead protease family proteinCocul_00071Not AvailableNegative63747 - 6531856683.9

Displaying genes 1 – 10 of 2381 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

203 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 203 metabolites

Health Effects

No health effects information available for this bacterium.