Bombella intestini str. R-52487

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Acetobacteraceae

Genus

Bombella

Description

Bombella intestini strain R-52487 is characterized by having a single replicon, which is an important trait for understanding its genomic structure and stability. The strain is cataloged under the accession number JATM00000000.1, providing a unique identifier for researchers interested in accessing its genomic data. In studying Bombella intestini, it is important to consider its ecological role. This bacterium is known to inhabit the intestines of various organisms, suggesting a potential symbiotic relationship. Such relationships can contribute to the host's digestive processes, nutrient absorption, and overall gut health. The presence of Bombella intestini in the intestines of specific species may indicate its adaptation to particular host environments, emphasizing its potential importance in microbial ecology and host interactions. Understanding the genomic characteristics of Bombella intestini strain R-52487, including its single replicon, could provide insights into its metabolic capabilities and functional roles within the intestinal microbiome. This knowledge may further aid in exploring its contributions to gut health and its potential applications in biotechnology or medicine.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyAcetobacteraceae
GenusBombella
SpeciesBombella intestini
StrainR-52487

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bombella intestini strain R-52487 R-52487_12, whole genome shotgun

Gene Summary

Adenine Count

447260 bp

Thymine Count

464307 bp

Guanine Count

570350 bp

Cytosine Count

541259 bp

Genome Length

2023176 bp

Protein-coding Genes

1574 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
clp proteaseAL01_05640Not AvailableNegative1163310 - 116459347132.5
ribosome maturation protein rimpAL01_05650Not AvailablePositive1165528 - 116611521159.5
transcription elongation factor nusaAL01_05655Not AvailablePositive1166150 - 116769457451.8
hypothetical proteinAL01_05660Not AvailablePositive1167666 - 116833423911.0
translation initiation factor if-2AL01_05665Not AvailablePositive1168351 - 117109898576.1
ribosome-binding factor aAL01_05670Not AvailablePositive1171095 - 117153816570.7
pseudouridine synthaseAL01_05675Not AvailablePositive1171556 - 117253034835.0
30s ribosomal protein s15AL01_05680Not AvailablePositive1172514 - 117278310535.9
polynucleotide phosphorylase/polyadenylaseAL01_05685Not AvailablePositive1172981 - 117513177340.2
2-nitropropane dioxygenaseAL01_05690Not AvailablePositive1175208 - 117663552204.8

Displaying genes 971 – 980 of 1629 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.