Chitinophaga dinghuensis str. DSM 29821

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga dinghuensis strain DSM 29821 is a Gram-negative bacterium characterized by its rod shape. This organism has been classified under the genus Chitinophaga, which is known for its ability to degrade chitin, a key component of the exoskeletons of arthropods and the cell walls of fungi. The strain DSM 29821 possesses a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability and metabolic capabilities. The genetic sequence of this strain is available under the accession number QLMA00000000.1, providing a resource for further exploration of its genomic features and functional potential. Chitinophaga dinghuensis is part of a group of bacteria that play significant roles in nutrient cycling, particularly in the decomposition of chitin-rich materials in various ecosystems. This ecological function is crucial, as it aids in the breakdown of organic matter and contributes to soil health and fertility. The ability of this strain to degrade chitin may also have implications for biotechnology, particularly in bioremediation and waste management strategies aimed at utilizing chitinous waste products. Thus, Chitinophaga dinghuensis strain DSM 29821 exemplifies the important ecological roles that specialized bacteria play in their environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga dinghuensis
StrainDSM 29821

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga dinghuensis strain DSM 29821 Ga0181032_124, whole

Gene Summary

Adenine Count

1970474 bp

Thymine Count

1967742 bp

Guanine Count

1618595 bp

Cytosine Count

1558805 bp

Genome Length

7116247 bp

Protein-coding Genes

5762 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent clp protease atp-binding subunit clpbCLV59_104308Not AvailablePositive3344973 - 334757397400.1
trna(arg) a34 adenosine deaminase tadaCLV59_104309Not AvailablePositive3347685 - 334816418046.5
putative zinc finger proteinCLV59_104310Not AvailableNegative3348183 - 334854214080.2
rna polymerase sigma-70 factor (ecf subfamily)CLV59_104311Not AvailableNegative3348558 - 334913923091.9
putative zinc finger proteinCLV59_104312Not AvailableNegative3349324 - 335049042432.9
rna polymerase sigma factor (sigma-70 family)CLV59_104313Not AvailableNegative3350480 - 335105522499.2
nlpc/p60 family proteinCLV59_104314Not AvailablePositive3351151 - 335192128260.7
inorganic pyrophosphataseCLV59_104315Not AvailableNegative3352006 - 335254520541.7
uncharacterized protein duf4878CLV59_104316Not AvailableNegative3352711 - 335320517927.2
phosphate starvation-inducible protein phohCLV59_104317Not AvailableNegative3353349 - 335430235247.7

Displaying genes 2791 – 2800 of 5833 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.