Chitinophaga dinghuensis str. DSM 29821

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga dinghuensis strain DSM 29821 is a Gram-negative bacterium characterized by its rod shape. This organism has been classified under the genus Chitinophaga, which is known for its ability to degrade chitin, a key component of the exoskeletons of arthropods and the cell walls of fungi. The strain DSM 29821 possesses a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability and metabolic capabilities. The genetic sequence of this strain is available under the accession number QLMA00000000.1, providing a resource for further exploration of its genomic features and functional potential. Chitinophaga dinghuensis is part of a group of bacteria that play significant roles in nutrient cycling, particularly in the decomposition of chitin-rich materials in various ecosystems. This ecological function is crucial, as it aids in the breakdown of organic matter and contributes to soil health and fertility. The ability of this strain to degrade chitin may also have implications for biotechnology, particularly in bioremediation and waste management strategies aimed at utilizing chitinous waste products. Thus, Chitinophaga dinghuensis strain DSM 29821 exemplifies the important ecological roles that specialized bacteria play in their environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga dinghuensis
StrainDSM 29821

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga dinghuensis strain DSM 29821 Ga0181032_124, whole

Gene Summary

Adenine Count

1970474 bp

Thymine Count

1967742 bp

Guanine Count

1618595 bp

Cytosine Count

1558805 bp

Genome Length

7116247 bp

Protein-coding Genes

5762 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase-3 subunit epsilonCLV59_103527Not AvailableNegative2778196 - 277896929663.8
udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligaseCLV59_103528Not AvailableNegative2779003 - 278035850229.2
hypothetical proteinCLV59_103529Not AvailablePositive2780508 - 27806635724.28
bacillithiol system protein ytxjCLV59_103530Not AvailablePositive2780671 - 278100012358.8
4-hydroxy-3-polyprenylbenzoate decarboxylaseCLV59_103531Not AvailablePositive2781095 - 278166721019.3
3-dehydroquinate dehydratase-2CLV59_103532Not AvailablePositive2781714 - 278212715143.3
nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family)CLV59_103533Not AvailableNegative2782189 - 278297427743.3
helix-turn-helix proteinCLV59_103534Not AvailableNegative2783045 - 278394734418.6
putative aminopeptidase frvxCLV59_103535Not AvailableNegative2784069 - 278517541277.7
ubia prenyltransferase family proteinCLV59_103536Not AvailableNegative2785222 - 278611234020.2

Displaying genes 2351 – 2360 of 5833 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.