Pseudomonas sp. AP42

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. AP42 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait can be significant for understanding the organism's replication and genetic stability. The accession number for this strain is LYSO00000000.1, which provides a reference for researchers looking to access genomic information related to this particular strain. The ecological or biological implications of Pseudomonas sp. AP42 may be substantial. Members of the Pseudomonas genus are known for their metabolic versatility and ability to thrive in diverse environments, including soil and aquatic systems. This versatility often enables them to play vital roles in biogeochemical cycles, such as nitrogen cycling, and in the biodegradation of various organic pollutants. Thus, Pseudomonas sp. AP42 may contribute to environmental processes or bioremediation efforts, although specific details about its ecological roles remain unspecified. Overall, the genomic characteristics of Pseudomonas sp. AP42, particularly its single replicon, may influence its adaptability and ecological interactions, highlighting the importance of studying such microorganisms in various environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. AP42
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. AP42
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. AP42 contig00229, whole genome shotgun sequence.

Gene Summary

Adenine Count

1356366 bp

Thymine Count

1364579 bp

Guanine Count

2025278 bp

Cytosine Count

2022910 bp

Genome Length

6769133 bp

Protein-coding Genes

5793 genes

Non-Coding Genes

222 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagellar biosynthesis protein flagA7K61_12360Not AvailableNegative5184534 - 518488112191.4
flagellinA7K61_12365Not AvailableNegative5184958 - 518669758094.9
3-oxoacyl-acp synthaseA7K61_12370Not AvailableNegative5187086 - 518801533218.7
flagellar hook-associated protein 3A7K61_12375Not AvailableNegative5188292 - 518990255912.1
flagellar hook-associated protein flgkA7K61_12380Not AvailableNegative5189917 - 519196269752.1
flagellar rod assembly protein/muramidase flgjA7K61_12385Not AvailableNegative5191973 - 519323245141.4
flagellar biosynthesis protein flgiA7K61_12390Not AvailableNegative5193237 - 519434338030.1
flagellar basal body l-ring proteinA7K61_12395Not AvailableNegative5194353 - 519504824215.5
flagellar basal-body rod protein flggA7K61_12400Not AvailableNegative5195101 - 519588627513.3
flagellar biosynthesis protein flgfA7K61_12405Not AvailableNegative5195949 - 519668926225.4

Displaying genes 4621 – 4630 of 6015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.