Pseudomonas sp. AP42

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. AP42 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait can be significant for understanding the organism's replication and genetic stability. The accession number for this strain is LYSO00000000.1, which provides a reference for researchers looking to access genomic information related to this particular strain. The ecological or biological implications of Pseudomonas sp. AP42 may be substantial. Members of the Pseudomonas genus are known for their metabolic versatility and ability to thrive in diverse environments, including soil and aquatic systems. This versatility often enables them to play vital roles in biogeochemical cycles, such as nitrogen cycling, and in the biodegradation of various organic pollutants. Thus, Pseudomonas sp. AP42 may contribute to environmental processes or bioremediation efforts, although specific details about its ecological roles remain unspecified. Overall, the genomic characteristics of Pseudomonas sp. AP42, particularly its single replicon, may influence its adaptability and ecological interactions, highlighting the importance of studying such microorganisms in various environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. AP42
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. AP42
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. AP42 contig00229, whole genome shotgun sequence.

Gene Summary

Adenine Count

1356366 bp

Thymine Count

1364579 bp

Guanine Count

2025278 bp

Cytosine Count

2022910 bp

Genome Length

6769133 bp

Protein-coding Genes

5793 genes

Non-Coding Genes

222 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion proteinA7K61_18570Not AvailablePositive3697070 - 369811339251.2
clpv1 family t6ss atpaseA7K61_18575Not AvailablePositive3698106 - 370076697107.7
type vi secretion protein impaA7K61_18580Not AvailablePositive3700923 - 370286972319.5
hypothetical proteinA7K61_18585Not AvailablePositive3702885 - 370331915923.0
hypothetical proteinA7K61_18595Not AvailablePositive3707638 - 370822222028.2
trifunctional transcriptional regulator/proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenaseA7K61_01015Not AvailableNegative3709108 - 3713061142610.0
sodium/proline symporterA7K61_01020Not AvailablePositive3713524 - 371500853087.8
hypothetical proteinA7K61_01025Not AvailableNegative3715074 - 371546014494.2
ssu ribosomal protein s2p (sae)A7K61_01030Not AvailableNegative3715450 - 371639733551.4
type iv secretion protein rhsA7K61_01035Not AvailablePositive3716749 - 371877074457.7

Displaying genes 3401 – 3410 of 6015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.