Pseudomonas sp. AP42

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. AP42 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait can be significant for understanding the organism's replication and genetic stability. The accession number for this strain is LYSO00000000.1, which provides a reference for researchers looking to access genomic information related to this particular strain. The ecological or biological implications of Pseudomonas sp. AP42 may be substantial. Members of the Pseudomonas genus are known for their metabolic versatility and ability to thrive in diverse environments, including soil and aquatic systems. This versatility often enables them to play vital roles in biogeochemical cycles, such as nitrogen cycling, and in the biodegradation of various organic pollutants. Thus, Pseudomonas sp. AP42 may contribute to environmental processes or bioremediation efforts, although specific details about its ecological roles remain unspecified. Overall, the genomic characteristics of Pseudomonas sp. AP42, particularly its single replicon, may influence its adaptability and ecological interactions, highlighting the importance of studying such microorganisms in various environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. AP42
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. AP42
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. AP42 contig00229, whole genome shotgun sequence.

Gene Summary

Adenine Count

1356366 bp

Thymine Count

1364579 bp

Guanine Count

2025278 bp

Cytosine Count

2022910 bp

Genome Length

6769133 bp

Protein-coding Genes

5793 genes

Non-Coding Genes

222 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinA7K61_18520Not AvailableNegative3685983 - 368727247094.7
type vi secretion system-associated proteinA7K61_18525Not AvailableNegative3687279 - 368861348696.3
type vi secretion system-associated lipoproteinA7K61_18530Not AvailableNegative3688632 - 368914118249.6
type vi secretion proteinA7K61_18535Not AvailableNegative3689199 - 369052748535.6
type vi secretion protein impaA7K61_18540Not AvailablePositive3690921 - 369194036854.3
type vi secretion system-associated proteinA7K61_18545Not AvailablePositive3691995 - 369250118417.2
evpb family type vi secretion proteinA7K61_18550Not AvailablePositive3692504 - 369400055744.6
hcp1 family type vi secretion system effectorA7K61_18555Not AvailablePositive3694174 - 369466217519.9
type vi secretion system lysozymeA7K61_18560Not AvailablePositive3694735 - 369525018909.6
type vi secretion system protein impgA7K61_18565Not AvailablePositive3695247 - 369710669162.6

Displaying genes 3391 – 3400 of 6015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.