Pseudomonas sp. AP42

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. AP42 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait can be significant for understanding the organism's replication and genetic stability. The accession number for this strain is LYSO00000000.1, which provides a reference for researchers looking to access genomic information related to this particular strain. The ecological or biological implications of Pseudomonas sp. AP42 may be substantial. Members of the Pseudomonas genus are known for their metabolic versatility and ability to thrive in diverse environments, including soil and aquatic systems. This versatility often enables them to play vital roles in biogeochemical cycles, such as nitrogen cycling, and in the biodegradation of various organic pollutants. Thus, Pseudomonas sp. AP42 may contribute to environmental processes or bioremediation efforts, although specific details about its ecological roles remain unspecified. Overall, the genomic characteristics of Pseudomonas sp. AP42, particularly its single replicon, may influence its adaptability and ecological interactions, highlighting the importance of studying such microorganisms in various environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. AP42
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. AP42
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. AP42 contig00229, whole genome shotgun sequence.

Gene Summary

Adenine Count

1356366 bp

Thymine Count

1364579 bp

Guanine Count

2025278 bp

Cytosine Count

2022910 bp

Genome Length

6769133 bp

Protein-coding Genes

5793 genes

Non-Coding Genes

222 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
poly(beta-d-mannuronate) lyaseA7K61_03555Not AvailableNegative3284960 - 328606941765.7
alginate o-acetyltransferaseA7K61_03560Not AvailableNegative3286078 - 328752653616.5
poly(beta-d-mannuronate) c5 epimeraseA7K61_03565Not AvailableNegative3287538 - 328910657577.0
transcriptional regulatorA7K61_03570Not AvailableNegative3289106 - 329059655321.0
alginate biosynthesis proteinA7K61_03575Not AvailableNegative3290593 - 329201751600.8
hemolysin dA7K61_03580Not AvailableNegative3292107 - 329327341940.1
glycosyl transferaseA7K61_03585Not AvailableNegative3293311 - 329480156267.4
gdp-mannose dehydrogenaseA7K61_03590Not AvailableNegative3294876 - 329619247432.9
hypothetical proteinA7K61_03595Not AvailableNegative3297071 - 329785029437.2
polysaccharide deacetylaseA7K61_03600Not AvailablePositive3298094 - 329921842254.3

Displaying genes 3031 – 3040 of 6015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.