Pseudomonas sp. AP42

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. AP42 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait can be significant for understanding the organism's replication and genetic stability. The accession number for this strain is LYSO00000000.1, which provides a reference for researchers looking to access genomic information related to this particular strain. The ecological or biological implications of Pseudomonas sp. AP42 may be substantial. Members of the Pseudomonas genus are known for their metabolic versatility and ability to thrive in diverse environments, including soil and aquatic systems. This versatility often enables them to play vital roles in biogeochemical cycles, such as nitrogen cycling, and in the biodegradation of various organic pollutants. Thus, Pseudomonas sp. AP42 may contribute to environmental processes or bioremediation efforts, although specific details about its ecological roles remain unspecified. Overall, the genomic characteristics of Pseudomonas sp. AP42, particularly its single replicon, may influence its adaptability and ecological interactions, highlighting the importance of studying such microorganisms in various environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. AP42
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. AP42
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. AP42 contig00229, whole genome shotgun sequence.

Gene Summary

Adenine Count

1356366 bp

Thymine Count

1364579 bp

Guanine Count

2025278 bp

Cytosine Count

2022910 bp

Genome Length

6769133 bp

Protein-coding Genes

5793 genes

Non-Coding Genes

222 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
autotransporter outer membrane beta-barrel domain-containing proteinA7K61_09580Not AvailablePositive1426436 - 142903090585.6
hypothetical proteinA7K61_09585Not AvailablePositive1429744 - 14299447507.26
type i methionyl aminopeptidaseA7K61_09590Not AvailablePositive1429944 - 143071428160.9
dimethyl sulfone monooxygenase sfngA7K61_09595Not AvailableNegative1430752 - 143187641170.5
hypothetical proteinA7K61_09600Not AvailableNegative1432533 - 143331827226.4
hypothetical proteinA7K61_09605Not AvailablePositive1433512 - 143403317986.5
rna polymerase subunit sigmaA7K61_09610Not AvailablePositive1434120 - 143465019799.8
rna polymerase subunit sigma-70A7K61_09615Not AvailablePositive1434647 - 143532124158.5
two-component sensor histidine kinaseA7K61_09620Not AvailableNegative1435322 - 143662349044.5
dna-binding response regulatorA7K61_09625Not AvailableNegative1436627 - 143732826174.6

Displaying genes 1411 – 1420 of 6015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.