Rhizobium sp. YS-1r

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. YS-1r is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This species contains a single replicon, indicating a streamlined genomic structure that may support efficient replication and adaptability. The accession number for Rhizobium sp. YS-1r is JPYQ00000000.1, which serves as a unique identifier for this strain within genetic databases. The ability of Rhizobium sp. YS-1r to form symbiotic relationships with legumes is a significant ecological trait. This interaction is crucial for nitrogen fixation, a process that converts atmospheric nitrogen into a form usable by plants, thereby enhancing soil fertility. The rod shape and motility provided by flagella may play a role in the bacterium's colonization of root nodules in host plants, where these symbiotic relationships occur. Overall, the traits of Rhizobium sp. YS-1r highlight its potential contributions to sustainable agriculture through improved nitrogen availability in soils, which can benefit crop yields and promote soil health. The genetic simplicity, indicated by the presence of a single replicon, may also suggest a specialized adaptation to its ecological niche, emphasizing the evolutionary significance of this bacterium in agricultural ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. YS-1r
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. YS-1r
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. YS-1r CONTIG.304, whole genome shotgun sequence.

Gene Summary

Adenine Count

1256488 bp

Thymine Count

1248466 bp

Guanine Count

1937902 bp

Cytosine Count

1939519 bp

Genome Length

6385152 bp

Protein-coding Genes

5568 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
inosose dehydrataseJL39_15950Not AvailableNegative3236242 - 323715333116.2
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolaseJL39_15955Not AvailableNegative3237155 - 323897866078.1
5-dehydro-2-deoxygluconokinaseJL39_15960Not AvailableNegative3238975 - 324089470702.3
rpir family transcriptional regulatorJL39_15965Not AvailableNegative3241019 - 324183729650.9
inositol 2-dehydrogenaseJL39_15970Not AvailablePositive3242015 - 324300435209.1
saccharopine dehydrogenaseJL39_15980Not AvailableNegative3243137 - 324437545323.3
carboxynorspermidine decarboxylaseJL39_15985Not AvailableNegative3244411 - 324551141151.9
hypothetical proteinJL39_15990Not AvailableNegative3245638 - 32458718400.36
nicotinate-nucleotide pyrophosphorylaseJL39_15995Not AvailableNegative3246000 - 324685129399.5
l-aspartate oxidaseJL39_16000Not AvailableNegative3246851 - 324839253105.1

Displaying genes 2871 – 2880 of 5646 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.