Rhizobium sp. YS-1r

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. YS-1r is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This species contains a single replicon, indicating a streamlined genomic structure that may support efficient replication and adaptability. The accession number for Rhizobium sp. YS-1r is JPYQ00000000.1, which serves as a unique identifier for this strain within genetic databases. The ability of Rhizobium sp. YS-1r to form symbiotic relationships with legumes is a significant ecological trait. This interaction is crucial for nitrogen fixation, a process that converts atmospheric nitrogen into a form usable by plants, thereby enhancing soil fertility. The rod shape and motility provided by flagella may play a role in the bacterium's colonization of root nodules in host plants, where these symbiotic relationships occur. Overall, the traits of Rhizobium sp. YS-1r highlight its potential contributions to sustainable agriculture through improved nitrogen availability in soils, which can benefit crop yields and promote soil health. The genetic simplicity, indicated by the presence of a single replicon, may also suggest a specialized adaptation to its ecological niche, emphasizing the evolutionary significance of this bacterium in agricultural ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. YS-1r
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. YS-1r
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. YS-1r CONTIG.304, whole genome shotgun sequence.

Gene Summary

Adenine Count

1256488 bp

Thymine Count

1248466 bp

Guanine Count

1937902 bp

Cytosine Count

1939519 bp

Genome Length

6385152 bp

Protein-coding Genes

5568 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cdp-diacylglycerol--serine o-phosphatidyltransferaseJL39_12580Not AvailableNegative2560818 - 256164530154.5
phosphatidylserine decarboxylaseJL39_12585Not AvailableNegative2561666 - 256236425625.1
atp-binding proteinJL39_12590Not AvailableNegative2562496 - 256326027423.3
cysteine abc transporter permeaseJL39_12595Not AvailableNegative2563257 - 256393724862.0
amino acid abc transporter substrate-binding proteinJL39_12600Not AvailableNegative2564033 - 256480627632.9
metal abc transporter permeaseJL39_12610Not AvailableNegative2565156 - 256704570175.9
hypothetical proteinJL39_12620Not AvailableNegative2567809 - 256960861232.6
lysine decarboxylaseJL39_12625Not AvailablePositive2569813 - 257041821968.8
hypothetical proteinJL39_12630Not AvailableNegative2570425 - 257075412120.5
permeaseJL39_12635Not AvailableNegative2570772 - 257168933069.7

Displaying genes 2261 – 2270 of 5646 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.