Rhizobium sp. YS-1r

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. YS-1r is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its motility. This species contains a single replicon, indicating a streamlined genomic structure that may support efficient replication and adaptability. The accession number for Rhizobium sp. YS-1r is JPYQ00000000.1, which serves as a unique identifier for this strain within genetic databases. The ability of Rhizobium sp. YS-1r to form symbiotic relationships with legumes is a significant ecological trait. This interaction is crucial for nitrogen fixation, a process that converts atmospheric nitrogen into a form usable by plants, thereby enhancing soil fertility. The rod shape and motility provided by flagella may play a role in the bacterium's colonization of root nodules in host plants, where these symbiotic relationships occur. Overall, the traits of Rhizobium sp. YS-1r highlight its potential contributions to sustainable agriculture through improved nitrogen availability in soils, which can benefit crop yields and promote soil health. The genetic simplicity, indicated by the presence of a single replicon, may also suggest a specialized adaptation to its ecological niche, emphasizing the evolutionary significance of this bacterium in agricultural ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. YS-1r
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. YS-1r
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. YS-1r CONTIG.304, whole genome shotgun sequence.

Gene Summary

Adenine Count

1256488 bp

Thymine Count

1248466 bp

Guanine Count

1937902 bp

Cytosine Count

1939519 bp

Genome Length

6385152 bp

Protein-coding Genes

5568 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fad-dependent oxidoreductaseJL39_11625Not AvailableNegative2385072 - 238655954300.7
lysr family transcriptional regulatorJL39_11630Not AvailableNegative2386559 - 238756035680.4
lysr family transcriptional regulatorJL39_11635Not AvailableNegative2387796 - 238873133254.4
carboxylesteraseJL39_11640Not AvailableNegative2388866 - 239035953574.7
spermidine/putrescine abc transporter permeaseJL39_11645Not AvailableNegative2390367 - 239116128701.2
polyamine abc transporter permeaseJL39_11650Not AvailableNegative2391170 - 239199729729.5
spermidine/putrescine abc transporter atp-binding proteinJL39_11655Not AvailableNegative2392048 - 239311538363.8
spermidine/putrescine abc transporter substrate-binding proteinJL39_11660Not AvailableNegative2393140 - 239421038313.6
peptidase m19JL39_11665Not AvailableNegative2394354 - 239535536861.3
2-hydroxychromene-2-carboxylate isomeraseJL39_11670Not AvailableNegative2395355 - 239599023680.3

Displaying genes 2091 – 2100 of 5646 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.