Allobosea vaviloviae str. SD260

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Alloboseaceae

Genus

Allobosea

Description

Allobosea vaviloviae str. SD260 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses a single replicon, which is significant in understanding its genetic structure and replication processes. The genome of A. vaviloviae str. SD260 is available under the accession number LGSZ00000000.1, providing a resource for further genomic and phylogenetic studies. The classification as Gram-negative indicates that A. vaviloviae str. SD260 has a thinner peptidoglycan layer surrounded by an outer membrane, which can influence its susceptibility to antibiotics and its interactions within its environment. This trait is essential for understanding its ecological niche and potential roles in various biological systems. In terms of ecological significance, the specific traits of A. vaviloviae str. SD260 suggest that it may occupy a unique position in its habitat, possibly contributing to nutrient cycling or interacting with other microorganisms. The single replicon indicates a streamlined genomic architecture that could reflect an adaptation to its ecological niche, allowing for efficient replication and survival in specific environments. Overall, the traits of A. vaviloviae str. SD260 provide insights into its biological characteristics and potential ecological roles, emphasizing the importance of understanding microbial diversity and function in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyAlloboseaceae
GenusAllobosea
SpeciesAllobosea vaviloviae
StrainSD260

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bosea vaviloviae strain SD260 contig_37, whole genome shotgun

Gene Summary

Adenine Count

947644 bp

Thymine Count

943780 bp

Guanine Count

1848648 bp

Cytosine Count

1862013 bp

Genome Length

5602085 bp

Protein-coding Genes

4958 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidaseAE618_24300Not AvailableNegative4995314 - 499606327338.1
hypothetical proteinAE618_24305Q49757Negative4996179 - 499702130120.7
a alpha-helical domain with a conserved er motiAE618_24310Not AvailableNegative4997105 - 499804635751.3
hypothetical proteinAE618_24315Q55587Negative4998120 - 499955352517.3
serine--glyoxylate aminotransferaseAE618_24320Not AvailableNegative4999694 - 500089342652.5
gntr family transcriptional regulatorAE618_24325Not AvailablePositive5001084 - 500177625921.3
tricarboxylate transporterAE618_24330Not AvailablePositive5001997 - 500298035073.1
small permease of tripartite tricarboxylate transporterAE618_24335Not AvailablePositive5003142 - 500364218224.6
tricarboxylate transporterAE618_24340Not AvailablePositive5003652 - 500517853017.3
lactate dehydrogenaseAE618_24345P77748Positive5005183 - 5008149107122.0

Displaying genes 4511 – 4520 of 5036 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

313 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 313 metabolites

Health Effects

No health effects information available for this bacterium.